Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J21
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.1  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   6.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   6.3  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   8.3  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 348 RLPQFVAFYLWIFWLTFHVCLVSWYIYSYLLK 443
           R+P     Y W  W+ F V L + Y+Y  L++
Sbjct: 224 RIPDLTVIYRWYLWVGFGVGLFA-YLYLSLVR 254


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 26  QNHDETSCMHFFVINMSI*NVVMLFTH 106
           QNH + SC  FF  N +  + +++  H
Sbjct: 578 QNHSQLSCYSFFDYNYTFSSALVVLLH 604


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 250 YDAWCVIF-AYVIRQTLTYYFKLMHRQKE---VFKRNGFRNLSPFTCGYFG 390
           Y A C+ F A V+   + + F L H  +E   +FK + ++   P T  +FG
Sbjct: 68  YLAVCLFFLASVLSCAIIFRFYL-HTNRENFSLFKNDSYKQKEPITVSHFG 117


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 341 SETASAICRLLPVDILVDLPRMSSVLVHLLVFTEIINFVY 460
           S+ A  + ++L  + LVD  R S+  V  L    ++NF+Y
Sbjct: 478 SDLAIDLLKVLTRNCLVDSARYSTANVPPLCLDALLNFIY 517


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 415 DTRHTWKVNQNIHR 374
           DTRH W +  NI+R
Sbjct: 535 DTRHYWNLTSNIYR 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,040
Number of Sequences: 5004
Number of extensions: 39441
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)