Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J21
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF039049-3|AAB94251.2| 298|Caenorhabditis elegans Serpentine re... 28 3.2
AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical ... 28 4.3
AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical ... 28 4.3
AB071420-1|BAB86940.1| 401|Caenorhabditis elegans 2-amino-3-car... 28 4.3
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 27 5.7
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 27 5.7
U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membr... 27 7.5
U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein... 27 7.5
Z81545-8|CAB04444.1| 327|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 235 LKSKTYDAWCVIFAYVIRQTLTYYFKLMHRQK 330
L+ K + A C++F VI L+ YF H QK
Sbjct: 725 LRQKVFIALCLVFCVVIAWILSCYFLKKHSQK 756
>AF039049-3|AAB94251.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein66 protein.
Length = 298
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 357 QFVAFYLWIFWLTFHVCLVSWYIYSYLLK*LTSFTF 464
+++ F LW+F LTF +C + + Y + + TF
Sbjct: 121 KYMIFILWMFELTFALCFYEYLCHFYFDEKIRFLTF 156
>AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical
protein Y71D11A.3a protein.
Length = 352
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 341 SETASAICRLLPVDILVDLPRMSSVLVH 424
SETA AIC +L +ILV P++ H
Sbjct: 209 SETAQAICSVLMGNILVLFPKLKLCFAH 236
>AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical
protein Y71D11A.3b protein.
Length = 401
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 341 SETASAICRLLPVDILVDLPRMSSVLVH 424
SETA AIC +L +ILV P++ H
Sbjct: 258 SETAQAICSVLMGNILVLFPKLKLCFAH 285
>AB071420-1|BAB86940.1| 401|Caenorhabditis elegans
2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
protein.
Length = 401
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 341 SETASAICRLLPVDILVDLPRMSSVLVH 424
SETA AIC +L +ILV P++ H
Sbjct: 258 SETAQAICSVLMGNILVLFPKLKLCFAH 285
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 280 VIRQTLTYYFKLMHRQKEVFKRNGFRN 360
++R T+ Y K ++FK NGF N
Sbjct: 656 ILRATILAYTKKFREAAKIFKENGFEN 682
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 280 VIRQTLTYYFKLMHRQKEVFKRNGFRN 360
++R T+ Y K ++FK NGF N
Sbjct: 656 ILRATILAYTKKFREAAKIFKENGFEN 682
>U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membrane
protein protein.
Length = 420
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 211 ISRELSRSLKSKTYDAWCVIFAYVIRQTLTYYFKLM 318
I R LS + K KT+D +YV TL +F +M
Sbjct: 7 IDRWLSETFKPKTFDDAVDRLSYVTTATLLAFFSIM 42
>U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein 3
protein.
Length = 420
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 211 ISRELSRSLKSKTYDAWCVIFAYVIRQTLTYYFKLM 318
I R LS + K KT+D +YV TL +F +M
Sbjct: 7 IDRWLSETFKPKTFDDAVDRLSYVTTATLLAFFSIM 42
>Z81545-8|CAB04444.1| 327|Caenorhabditis elegans Hypothetical
protein F49H6.11 protein.
Length = 327
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 360 FVAFYLWIFWLTFHVCLVSWYIYSYLLK*LTSFTFKYLF-YKNNY 491
F+ + L I TFH+ L S I SYL + F Y F Y NY
Sbjct: 107 FLIYILHILQQTFHLLLFSLAIMSYL-----KYQFPYDFLYSQNY 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,160,407
Number of Sequences: 27780
Number of extensions: 218677
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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