Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J20
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 266 1e-72
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 31 0.091
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 0.85
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 1.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 2.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.6
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 6.0
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 25 7.9
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 7.9
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 266 bits (653), Expect = 1e-72
Identities = 120/174 (68%), Positives = 149/174 (85%)
Frame = -3
Query: 574 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKA 395
+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP+P+VR A+ E+FKV+++GK+K+ +
Sbjct: 86 VPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSKKNS 145
Query: 394 WKRMVTKVTYVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSS 215
WKRM+TK T+VG+ FTR+P K+ERFIRPMALR KKA+VTH EL T LPIIGVKKNP S
Sbjct: 146 WKRMITKATFVGDGFTRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQS 205
Query: 214 QMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 53
YT LGV+TKGTVIEVN+SELGLVT GKVVWGKYAQ+TNNPE DGC+NA+LL
Sbjct: 206 PTYTQLGVLTKGTVIEVNVSELGLVTSGGKVVWGKYAQITNNPELDGCVNALLL 259
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 31.5 bits (68), Expect = 0.091
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 440 SVSLCSDLW-YWYIPFTGFLFTFLFNHIRQDFGTRLDISVK*VDR 571
S ++C LW + Y PFT FL +F+H+ +D DI VK VDR
Sbjct: 497 SKNICY-LWLFLYCPFTPFLT--VFSHLLEDDDLDADICVKDVDR 538
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 0.85
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 313 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 191
PM F + HP K FC+P + ++ P LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -3
Query: 280 THPELKATFCL-PIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV-WGKY 107
T P ++A FC+ P + + PS + +L + + ++ E+N +VTQ+ K
Sbjct: 137 TSPGIRAGFCIFPSLNI---PSGE---NLQIKSSSSLEEINKIPENIVTQSLSYTNLLKK 190
Query: 106 AQVTNNPENDGCINAVLL 53
+ + NP N+GC ++ L
Sbjct: 191 FETSPNPSNNGCFRSLAL 208
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 2.0
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Frame = +2
Query: 173 NGTLCYYSQASIHLGAGILLNANNG*AKCCL*LWMCHMRFLETKCHWP-DKPFKLW-WFT 346
+ +L + A + G ILL+A + C C++RF + + H P +P+ W +FT
Sbjct: 179 SSSLVLFDNAHVTEGRLILLDATLLFSMVCA--IYCYVRFFKLR-HTPFSRPWWAWLFFT 235
Query: 347 CKVLSYICDFCNHAFPSFPLCFTRL*HFEYFSVSLCSDLWYWYIPFTGFLFTFLFNHIRQ 526
LS C + F FT F +S+C +LWY + TG F H
Sbjct: 236 GFFLS--CTISTK-YVGF---FT----FLSIGLSVCLELWYLWDIKTGLTVERFFQHFLA 285
Query: 527 DF 532
F
Sbjct: 286 RF 287
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -3
Query: 454 AQADAEVFKVLQSGKTKRKAWKRMVTKVTYVGENFTRKPPKFERFI 317
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 2.6
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = -3
Query: 553 RDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRMVTK 374
RD + S+ I +++KEK + V + + QA V L TKR+ +K +V
Sbjct: 644 RDYWIKPLWASSCIPERKKEKFIR-TVFLNALEVQA---VNSKLAEALTKRQNYKPIVDN 699
Query: 373 VTYVGENFTRKPPKFERFIR 314
+ + F PKFE FIR
Sbjct: 700 IADI---FLEHVPKFEPFIR 716
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 26 IKALIHKLNQKHSINAAIILWIVCYLCIFSPN 121
I L+ HS A ++ +CYLC+++ N
Sbjct: 446 ISLLVQYTKDYHSEIAQMLCCSLCYLCLYAQN 477
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 280 THPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGK 110
T+P+ + CL + V + + T LG GT+I + ++ +++ KVVW K
Sbjct: 171 TYPK-QVRECLNVYQVLISKGFRNITVLGESAGGTLILSFLYQISELSKLNKVVWPK 226
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 332 LWWFTCKVLSYICDFCNHAFPSFPLCFTRL*HFEYFSVSLCSDL 463
L W TC LSY+ +AF S +CF + F +S S L
Sbjct: 261 LLWLTCAFLSYMAQ--GNAFRSL-VCFIQRGGIREFFISQSSSL 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,649
Number of Sequences: 5004
Number of extensions: 53587
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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