Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J19
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   4.9  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   6.5  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   8.6  

>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 275 YSLGVTDLVDSFKSYHSFVRSFIHIYTM*LRNNIATHFVVN 397
           + + +TD  ++  S  +  R FIH     L  N +  F+VN
Sbjct: 217 FVISMTDYYETLPSLWNVTRDFIHQNPQYLAQNNSLDFIVN 257


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 389  VVNLNVFIFKNYSKILY*FNLKVNT*YL*KEIGKY 493
            ++N+ +++    SK+   F L ++T Y   E+GK+
Sbjct: 1278 IINVELYLRSVSSKVKVVFGLPIDTIYQTTEVGKF 1312


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 200 YKNAIINFGVLKYYTNSELILLLCPYSLGVTDLVDSFKS 316
           ++NA++    L   TNS L L+    S+G+T  +D F++
Sbjct: 295 FENAMVLTMTLGGSTNSVLHLIAIAKSVGITLTLDDFQA 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,815
Number of Sequences: 5004
Number of extensions: 42411
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)