Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J19
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    27   7.8  
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    27   7.8  
AF003150-2|AAB54216.2|  185|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 272 PY--SLGVTDLVDSFKSYHSFVRSFIHIYTM*LRNNIATHFVVNL 400
           PY  S+G + +  +    H  V  F HI++M +  N  TH +V L
Sbjct: 285 PYGLSIGFSWMFHNVLGLHRIVAYFGHIFSMLITLNTCTHMIVCL 329


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 245 NSELILLLCPYSLGVTDLVDSFKSYHSFVRSFIHI 349
           NSE I L   +SLG T L   F  Y  ++  F  I
Sbjct: 601 NSECIQLFTNFSLGTTILQTIFTKYVQYINRFTKI 635


>AF003150-2|AAB54216.2|  185|Caenorhabditis elegans Hypothetical
           protein T05E7.4 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 408 LYLKTIVKYCTDLILRLIH 464
           L+L  I+ YC+ L++RLIH
Sbjct: 127 LFLTVIIFYCSYLVVRLIH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,392
Number of Sequences: 27780
Number of extensions: 227944
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)