Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J18
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   323   1e-89
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   319   2e-88
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   131   8e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    87   2e-18
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   0.81 
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.5  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   10.0 
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    25   10.0 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   10.0 

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  323 bits (793), Expect = 1e-89
 Identities = 143/183 (78%), Positives = 164/183 (89%)
 Frame = +2

Query: 8   VDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 187
           +DIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++
Sbjct: 221 LDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIV 280

Query: 188 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 367
           SA KA+HE  SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK
Sbjct: 281 SAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIK 340

Query: 368 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFD 547
           ++RTIQFVDWCPTGFK+GI Y+PP  VPG  +AKV+RAVCMLSNTT+IAEAW+RLDHKFD
Sbjct: 341 SRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFD 400

Query: 548 LMY 556
           LMY
Sbjct: 401 LMY 403


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  319 bits (783), Expect = 2e-88
 Identities = 142/183 (77%), Positives = 162/183 (88%)
 Frame = +2

Query: 8   VDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 187
           +DIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++
Sbjct: 217 LDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIV 276

Query: 188 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 367
           SA KA+HE  SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK
Sbjct: 277 SAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIK 336

Query: 368 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFD 547
            KRTIQFVDWCPTGFK+GI  +PP  + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFD
Sbjct: 337 AKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFD 396

Query: 548 LMY 556
           LMY
Sbjct: 397 LMY 399


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  131 bits (316), Expect = 8e-32
 Identities = 64/181 (35%), Positives = 103/181 (56%)
 Frame = +2

Query: 14  IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 193
           I+ P+Y +LN L+  +++ +T S RF G LN DL +   N+VP+PR+HF +V +AP+ + 
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276

Query: 194 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 373
             +  + +SV E+T   F+  N MV  DPRHG+Y+    L+RG V  K+V+  I +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336

Query: 374 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLM 553
            +  FV+W P      +   PP      DL     +   + N+T+I E + RL  +F  M
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAM 388

Query: 554 Y 556
           +
Sbjct: 389 F 389


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 5/182 (2%)
 Frame = +2

Query: 17  ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS-- 190
           + PT+   N+L+  ++S+ T +LR+ G +N DL     +L+P PR HF L +Y P  +  
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280

Query: 191 -AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATI 364
             E     + +V ++      P NQMV  +P +   +++   + +G+  P DV+ ++  I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340

Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVHR-AVCMLSNTTAIAEAWARLDHK 541
           + +R   F+ W P   +V ++ + P +         HR +  ML+N T+IA  + R   +
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYIKTN------HRVSGLMLANHTSIASLFKRTLDQ 394

Query: 542 FD 547
           +D
Sbjct: 395 YD 396


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 230 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 355
           +  ACFEP N    C   H K   C  L    +  KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 109 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 14
           DIE   E    GN+ ++L +K I++  G+ FN
Sbjct: 58  DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3

Query: 12   ILNARPTPTSIVLSARSYHRL 74
            I NAR   T  V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 361 GSDSRVDVLGHDVTAVQHAAGHVFAVT 281
           G+D +    GH V  +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 484  DGAMHLGEITAGHHGRGLVVDTDLETGRTPVHELDGALGLDGSDSRVDVL 335
            D   + G+IT G      V++ +         ELD  L  DGS+S   VL
Sbjct: 958  DDVSNSGDITMGEEPSEPVINFEKFGVEVDYDELDEELRNDGSESMASVL 1007


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  ALNVDLTEFQTNLVPYPRIHFPLVT 172
           A +V++ E +TN +P    HFP  T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -3

Query: 361 GSDSRVDVLGHDVTAVQHAAGHVFAVTRVTFHHLVGGLEASVRDLRYREL 212
           G D  +D  G D T      GH  A   +     +G L+    + R +EL
Sbjct: 41  GLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEE-RLKEL 89


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 485  CMLSNTTAIAEAWARLDHKFDLMY 556
            C++      +  W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,954
Number of Sequences: 5004
Number of extensions: 44074
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)