Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J17
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 32 0.065
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.26
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 29 0.34
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 29 0.60
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 0.80
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.4
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 1.4
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 1.8
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.4
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 2.4
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 2.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 5.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 5.6
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 5.6
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 25 7.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.4
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.4
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 7.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 7.4
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 9.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 9.8
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 31.9 bits (69), Expect = 0.065
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 484 GFSSVLDSAGTSVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSASAGA 335
G S S S GFGS G G+F S+ T ++ F +SG VS++A A
Sbjct: 126 GTSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNAFGTSG-FVSSNANA 174
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.9 bits (64), Expect = 0.26
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = -2
Query: 478 SSVLDSAGTSVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSAS 344
SS+L S+G GF S+ +G SS+ +L+S G VSS LVS+S
Sbjct: 3512 SSLLSSSG---GFSSSAFSTG--SSSFSLTSENGSVSSSSLVSSS 3551
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 363 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKTEEKPK 488
P TKP PD K EP+ + PKP +E + KPK
Sbjct: 173 PSSTKPAPDAK--------EPEFSSPKPKPAKSEPVKQSKPK 206
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 28.7 bits (61), Expect = 0.60
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 414 TPEPKSAEPKPTDVPAESKTEEKPKDSKP 500
TP+P S+ P P+ PA +TEE DS+P
Sbjct: 202 TPQPASSLPIPSSPPAALETEEN-VDSQP 229
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 0.80
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 359 FGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLF 195
F SF + FF + +FS + + FLF F + F F S LS LF
Sbjct: 129 FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 372 TKPKPDDKVKADEKTPEPKSAEPKPTD 452
+K DD++K D+KT E K A P D
Sbjct: 835 SKGSNDDEMKIDKKTTEEKEATPMEMD 861
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 426 KSAEPKPTDVPA--ESKTEEKPKDSKPHVM 509
KS P P+ VP+ E+K P +SKP ++
Sbjct: 108 KSLSPNPSSVPSSTETKASPTPLESKPQIV 137
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 366 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKTEEKPKDSK 497
+E KP + VK+ EK P+ K E K ++ KD K
Sbjct: 221 KEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKDKK 264
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 366 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPA 461
+ K K D K K D+K PK T VP+
Sbjct: 249 QNKKEKKDKKDKKDKKEKAPKEPPKAATPVPS 280
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 366 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKTEEKPKDSKP 500
EET+ P ++ K P AEP + +K E ++S P
Sbjct: 426 EETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTP 470
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 369 ETKPKPDDKVKADEKTPEPKSAEPKPTDVPAES 467
E PKPD+ + +K P P VP+E+
Sbjct: 1030 EESPKPDEYIDQKDKVQSPLLNGKSPVGVPSEA 1062
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 372 TKPKPDDKVKADEKTPEPKSAEPK-PTDVPAESKTEEKPKDSKPHVMFHLDLKDTPA 539
T+P D + + + P S P P S T E PKD P + +PA
Sbjct: 949 TRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPA 1005
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 420 EPKSAEPKPTDVPAESKTEEKPK 488
+P S PTD+ A+SK EKP+
Sbjct: 119 KPTSVSLSPTDLQAQSKLIEKPR 141
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 363 PEETKPKPDD-KVKADEKTPEPKSAEPKPTDVPAESKTEEKPKDS 494
P + P D K + P+P+++EP D AE E K++
Sbjct: 216 PSSSTPSADSAKPETTNPPPQPQASEPMEEDKTAEELEEAATKEA 260
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 90 ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 254
IT TS+D N + +FC+ F A+P + + +V P +T +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 367 KRQNQNQMIKSKQMKRHLNLNLQNQSLPTFLLNLRQKRSPRIV 495
K N + K+ +RH ++ PT + NL R+P+IV
Sbjct: 470 KESLSNDQLSVKEKRRH------HKKAPTLIQNLNSPRTPKIV 506
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 KADEKTPEPKSAEPKPTDVPAESKTEEKPKDSKPHV-MFHLDLKDTPAK 542
+ ++K+P+PK A K ++ SK ++P LD K T K
Sbjct: 4 RKNQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRKNATSLDSKKTTKK 52
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +3
Query: 381 KPDDKVKADEKT----PEPKSA----EPKPTDVPAESKTEEKPKDSKP 500
KP + VK++++T P+P + PT VP E ++ + D+ P
Sbjct: 275 KPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVP 322
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 89 HNFKSDITGPKFHDEGLIILHGLCGCDYCE 178
+N + + G E + L L GCDYCE
Sbjct: 208 YNIEKALNGLDMSVEQFVDLCILLGCDYCE 237
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 360 VWSQLLLVLFYLRAQVLFL*FLESDRVS 277
+W L+++L+YL VLF+ F S VS
Sbjct: 239 IWQSLVMILYYL-LYVLFVFFSGSSGVS 265
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 305 FSFWSRIGFLFLFRNGMLCFSGFCVSYRSR 216
FS W + FL+L L F G + +RSR
Sbjct: 433 FSSWLLLIFLYLLFTVPLSFVGSLIGFRSR 462
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 366 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKTEEKPKDSKPH 503
E KP K K D+K + + ++ K + A + ++ K K H
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKSH 497
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 363 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKTEEKPKDSK 497
PE+ K K+K+++ P +S + DV A S K + +
Sbjct: 113 PEQQKKALSSKIKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQ 157
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 340 QQKLRPNTLKRQNQNQMIKSKQMKRHLNLNLQ-NQSLPTFLLNLRQKRSPRIVS 498
Q+ L+P+T +NQ +K+K+ K N+NLQ + P +N + P I +
Sbjct: 501 QKSLKPDT---ENQESSVKNKKAK--SNVNLQYSPKTPICKINDETLKPPTIAN 549
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = +3
Query: 363 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKTEEKPKDSKPHVMFHLDLKDTPAK 542
P T KP V + P +A KP+ + + + P + F + K+ PA+
Sbjct: 455 PSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKEKPAR 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,045
Number of Sequences: 5004
Number of extensions: 32957
Number of successful extensions: 183
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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