Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J16
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 163 8e-42
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 163 8e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 163 8e-42
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 60 1e-10
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.024
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.52
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 1.2
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 1.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 3.7
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 3.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 3.7
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|... 24 4.8
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 24 4.8
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 24 6.4
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 24 6.4
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 24 6.4
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 24 6.4
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 6.4
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 24 6.4
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 23 8.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 8.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 23 8.5
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 23 8.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 163 bits (395), Expect = 8e-42
Identities = 74/103 (71%), Positives = 86/103 (83%)
Frame = +2
Query: 11 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 190
GQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+
Sbjct: 349 GQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPM 408
Query: 191 CVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTK 319
CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV G KVTK
Sbjct: 409 CVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVTK 451
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 163 bits (395), Expect = 8e-42
Identities = 74/103 (71%), Positives = 86/103 (83%)
Frame = +2
Query: 11 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 190
GQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+
Sbjct: 349 GQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPM 408
Query: 191 CVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTK 319
CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV G KVTK
Sbjct: 409 CVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVTK 451
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 163 bits (395), Expect = 8e-42
Identities = 74/103 (71%), Positives = 86/103 (83%)
Frame = +2
Query: 11 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 190
GQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+
Sbjct: 349 GQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPM 408
Query: 191 CVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVTK 319
CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV G KVTK
Sbjct: 409 CVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVTK 451
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 1e-10
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 17 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCV 196
++ GY+ V+ HTA FA++ K+D+ T + ++ P G I L P+C+
Sbjct: 573 LTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCM 631
Query: 197 ESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 286
E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 632 ERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.024
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 185 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 277
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.52
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 162 MAASPDLMDLGLSSVDLPVRRSTFS 88
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 183 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 22
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 1.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 147 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 28
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 3.7
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -2
Query: 318 LVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTRLTMAASPD 145
+VTLPPPAS ++F T T T + S ++ G+ + +++ + ++++S
Sbjct: 186 IVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSV 244
Query: 144 LMDLGLSSVDLPVRRSTFSLIS 79
L ++S PV S+ SL S
Sbjct: 245 LPTSIITSTSTPVTVSSSSLSS 266
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 10 RSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 102
+S + I CIG+ SPH +C R Q +P
Sbjct: 106 KSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 217 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 128
++FL+ + + LGGN + G+T G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 87 LISANLQAMWAVWQSNTGV 31
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 24.2 bits (50), Expect = 4.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 310 FATTCFLEVHSLYYTDGDRLPHVTHGETTE 221
F T+ ++V + TDG +PH HG+ E
Sbjct: 75 FGTSKDVDVVTKILTDGKIIPHREHGKHKE 104
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.2 bits (50), Expect = 4.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 315 VTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDST 193
+ L P +S TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 303 PPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDS 196
P LK ITP T C +AK+ + S +DS
Sbjct: 191 PEVKLKTEEIITPMDTTCKPEPSAKKIKLSPSSEDS 226
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 75 NLQAMWAVWQSNTGVYPFDI 16
N + MWAVW + + FD+
Sbjct: 295 NFKIMWAVWGTMRTINSFDL 314
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 75 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPC 191
+P + + + + Q++ L+P + PLS PSPC
Sbjct: 274 IPPTPSQFSAFMYQNQQSYLSPQSHYENPLSISSRPSPC 312
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 282 TAFITPTATVCLMSRTAKRPRGGNSWKDSTH 190
T+F T T + + R +G ++WK ST+
Sbjct: 203 TSFFTSCVTPKTILESPLRKQGSHNWKTSTN 233
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 SKRKSTVVLVNQQRTTLNPLNLV-MPPLSTWFPPSPCVWS 200
S+++ +++L+ + P+ M P+ W PP P + S
Sbjct: 70 SEQQESILLMCYENELQKPITCTPMGPICLWAPPEPVLRS 109
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -1
Query: 247 HVTHGETTEGWEFLEGLHTQGLGGN 173
HV GE EG++ ++ + + +G N
Sbjct: 134 HVVFGEVIEGYDIVKEIESTPVGAN 158
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 23 NGYTPVLDCHTAHIACKFAE 82
NG P + C T +I C +A+
Sbjct: 50 NGGQPCISCKTLNIECVYAQ 69
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 318 LVTLPPPASLKFTAFITPTATV 253
+V LPP AS + +A+ PT +V
Sbjct: 1019 VVPLPPTASQRASAYEPPTVSV 1040
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 174 FPPSPCVWSPSRNSHPSVVS 233
FP +P SPS +S+ SV++
Sbjct: 89 FPSNPTAHSPSSSSNDSVIT 108
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 28 IHTCIGLPHSPHSLQICR 81
I + GLPH+ + QICR
Sbjct: 168 IFSAAGLPHNEIAAQICR 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,899
Number of Sequences: 5004
Number of extensions: 32172
Number of successful extensions: 99
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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