Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J14
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    98   9e-22
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   5.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   7.6  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 97.9 bits (233), Expect = 9e-22
 Identities = 45/102 (44%), Positives = 60/102 (58%)
 Frame = +2

Query: 224 HPYIVFFHLIFRSSAILVYILCGWFSDSFIASFXXXXXXXSADFWTVKNISGRLLVGLRW 403
           HP  +FF L+FR+ AI+ YIL  +F+ SF+  F       + D WTVKN+SGRLLVGLRW
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106

Query: 404 WNYVDDNGKSHWVSEARQFQNRINQNESRLFWMGLILCPLIW 529
            N    +G+S W+ E+       N  + + FW  L L P IW
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIW 148


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 506 GPSRTAGSHSGLSDSGTVVLRKPNVIFHCHPHSST 402
           G + TAG+H+   D+  +V+  PNV ++   + ST
Sbjct: 492 GRNTTAGNHTVTRDTPPLVIYLPNVPYNYFTNIST 526


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 17  FLQCIFIIVF--SHYSAQVYDVFDSFVAMKNILS*NITFI 130
           FL C +  VF   H+ A+ Y   DSF++ +N+   N T I
Sbjct: 13  FLACFYTTVFGEKHFEAEEYR--DSFLSQENMNKINHTTI 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,528
Number of Sequences: 5004
Number of extensions: 55258
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)