Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J14
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 102 2e-22
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 99 1e-21
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285... 39 0.003
04_04_1269 + 32272290-32272321,32272924-32274143,32274390-322744... 29 1.9
12_02_0939 + 24581356-24581628 29 2.5
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425... 28 5.9
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 28 5.9
01_01_0334 - 2698347-2699020,2699321-2699477,2699576-2699647,269... 28 5.9
08_02_1611 - 28224239-28224511 27 7.7
08_02_0943 + 22849939-22850211 27 7.7
04_01_0495 - 6515982-6516254 27 7.7
01_06_0921 - 33017892-33018953 27 7.7
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 102 bits (244), Expect = 2e-22
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +2
Query: 224 HPYIVFFHLIFRSSAILVYILCGWFSDSFIASFXXXXXXXSADFWTVKNISGRLLVGLRW 403
+P FFH++F++ A+ YIL F +F+ F + DFW VKN+SGR+LVGLRW
Sbjct: 42 NPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNVSGRILVGLRW 101
Query: 404 WNYVDDNGKSHWVSEARQFQN--RINQNESRLFWMGLILCPLIWSSMFVFCL 553
WN +DD G S W E ++ R+N+ +S LFW L L W + +F L
Sbjct: 102 WNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLGIFSL 153
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 99 bits (238), Expect = 1e-21
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Frame = +2
Query: 224 HPYIVFFHLIFRSSAILVYILCGWFSDSFIASFXXXXXXXSADFWTVKNISGRLLVGLRW 403
+P FH++F++ A++ YIL F SF+ F + DFW VKN+SGR+LVG+RW
Sbjct: 48 NPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNVSGRILVGMRW 107
Query: 404 WNYVDDNGKSHWVSEARQFQ--NRINQNESRLFWMGLILCPLIWSSMFVFCL 553
WN +DD G S W E + R+N+ +S LFW L L W + +F L
Sbjct: 108 WNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILGIFSL 159
>04_01_0226 +
2842897-2842921,2843049-2843155,2843426-2843494,
2850676-2852745
Length = 756
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/117 (22%), Positives = 53/117 (45%)
Frame = -1
Query: 519 GQRIRPIQNSRLSFWFIRFWNCRASETQCDFPLSST*FHHLKPTSRRPLMFLTVQKSADS 340
G + +Q ++L ++ N + T +F L H L +R ++ + + ++
Sbjct: 209 GSSLEELQGNQLHWYQGYLHNEDHNNTNNEFLLQRA--HSLFHICKRGIVDSVINEDTEN 266
Query: 339 NNTTKTKLAMNESENQPQRMYTNIADERKIRWKNTMYGCSS*IHCWIIHCYRFIK*F 169
TK +N +PQRMY + E + + + +Y ++ +H WI +C R + F
Sbjct: 267 AEAETTKEIINNLSEEPQRMYKVMEMELSLMY-DILYTKAAVVHTWIGYCIRALSPF 322
>04_04_1269 +
32272290-32272321,32272924-32274143,32274390-32274433,
32274883-32275093,32275176-32275413,32275498-32275585,
32275865-32276020,32276370-32276444
Length = 687
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 548 KRRTCWTRSAGRGSGPSRTAGSHSGLSDSGTVVLRKPN 435
K RT WT A S + G ++ L DSG +VLR N
Sbjct: 96 KGRTLWTTMASPNSIVTEDDGVYAVLLDSGNLVLRLSN 133
>12_02_0939 + 24581356-24581628
Length = 90
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 557 RTGKRRTCWTRSAGRGSGPSRTAGSHSG 474
R G+R+ W R GRGSG G G
Sbjct: 42 RRGRRQRWWRRGRGRGSGEEGVEGGGEG 69
>05_01_0511 +
4256220-4256828,4256920-4257175,4257247-4257309,
4257397-4257491
Length = 340
Score = 27.9 bits (59), Expect = 5.9
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = -1
Query: 510 IRPIQNSRLSFWFIRFWNCRASETQCDFPLSST*FHHLKPTSRRPLMFLTVQKSADSNNT 331
+ P+QNSR+ W++ + Q +PLS F H K S + M SA+ N T
Sbjct: 80 LMPVQNSRMWRWYVE------NALQHGWPLSIVPFVHPKDPSVQMNMDDGDGPSAEVNET 133
Query: 330 TKTK---LAMNESENQPQRMYTNIADERKIRW 244
+ + L E + + +T A + +RW
Sbjct: 134 SVEEDWLLVTEEVVDHAREPHTEEAYQAYLRW 165
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 548 KRRTCWTRSAGRGSGPSRTAGSHSGLSDSGTVVLRKPN--VIFHC--HPHSSTISNQLV 384
K RT WT A G G+++ L DSG +VLR N I+ HP + +SN +
Sbjct: 187 KGRTVWTTMANVTGGD----GAYAVLLDSGNLVLRLSNNVTIWQSFDHPTDTILSNMKI 241
>01_01_0334 -
2698347-2699020,2699321-2699477,2699576-2699647,
2699697-2700641,2701183-2701259,2701908-2702064
Length = 693
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 527 RSAGRGSGPSRTAGSHSGLSDSGTVVL 447
+S G+GSG SR GS+ L D T V+
Sbjct: 45 QSQGKGSGGSRRRGSYVPLKDEDTSVM 71
>08_02_1611 - 28224239-28224511
Length = 90
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 557 RTGKRRTCWTRSAGRGSGPSRTAGSHSG 474
R G+R+ W R GRG G G G
Sbjct: 42 RRGRRQRWWRRGRGRGGGEEGVEGGGEG 69
>08_02_0943 + 22849939-22850211
Length = 90
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 557 RTGKRRTCWTRSAGRGSGPSRTAGSHSG 474
R G+R+ W R GRG G G G
Sbjct: 42 RRGRRQRWWRRGRGRGGGEEGVEGGGEG 69
>04_01_0495 - 6515982-6516254
Length = 90
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 557 RTGKRRTCWTRSAGRGSGPSRTAGSHSG 474
R G+R+ W R GRG G G G
Sbjct: 42 RRGRRQRWWRRGRGRGGGEEGVEGGGEG 69
>01_06_0921 - 33017892-33018953
Length = 353
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 510 IRPIQNSRLSFWFIRFWNCRASETQCDFPLSST*FHHLKPTSRRPLMFLTVQKSADSNNT 331
+ P+QNSR+ W++ + QC +PL+ F H K + M SA+ N T
Sbjct: 30 LMPVQNSRVWRWYLE------NALQCGWPLALVPFVHAKDPGVQMNMDDGEGPSAEVNET 83
Query: 330 TKTKLAMNE 304
+ ++ E
Sbjct: 84 SVEEVNARE 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,929
Number of Sequences: 37544
Number of extensions: 331941
Number of successful extensions: 959
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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