Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J14
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...   113   1e-25
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...   113   1e-25
AC024831-11|ABQ13053.1|  361|Caenorhabditis elegans Hypothetical...    29   3.0  
AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    29   3.0  
Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U13070-10|AAC46644.3|  294|Caenorhabditis elegans Hypothetical p...    28   5.3  
U13070-9|AAU05578.1|  388|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U13070-8|AAN84828.1|  433|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AB079783-1|BAB84821.1|  433|Caenorhabditis elegans endo-beta-N-a...    28   5.3  
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   9.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   9.2  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score =  113 bits (271), Expect = 1e-25
 Identities = 47/101 (46%), Positives = 64/101 (63%)
 Frame = +2

Query: 227 PYIVFFHLIFRSSAILVYILCGWFSDSFIASFXXXXXXXSADFWTVKNISGRLLVGLRWW 406
           P IV  HL F+ +A+  Y    +F++SFI  F       S DFWTVKNI+GRLLVGLRWW
Sbjct: 31  PTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLVGLRWW 90

Query: 407 NYVDDNGKSHWVSEARQFQNRINQNESRLFWMGLILCPLIW 529
           N+VD +G +HW  E+ +   R    + R+FW+GL++ P  W
Sbjct: 91  NFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAW 131


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score =  113 bits (271), Expect = 1e-25
 Identities = 47/101 (46%), Positives = 64/101 (63%)
 Frame = +2

Query: 227 PYIVFFHLIFRSSAILVYILCGWFSDSFIASFXXXXXXXSADFWTVKNISGRLLVGLRWW 406
           P IV  HL F+ +A+  Y    +F++SFI  F       S DFWTVKNI+GRLLVGLRWW
Sbjct: 73  PTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLVGLRWW 132

Query: 407 NYVDDNGKSHWVSEARQFQNRINQNESRLFWMGLILCPLIW 529
           N+VD +G +HW  E+ +   R    + R+FW+GL++ P  W
Sbjct: 133 NFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAW 173


>AC024831-11|ABQ13053.1|  361|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3b protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 294 GSRTHSSPALFWWCCCYLLTFG 359
           G++  S PA FWWC   + T G
Sbjct: 282 GTKFTSIPATFWWCVVTMATVG 303


>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 294 GSRTHSSPALFWWCCCYLLTFG 359
           G++  S PA FWWC   + T G
Sbjct: 442 GTKFTSIPATFWWCVVTMATVG 463


>Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical
           protein E04D5.3 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 419 DNGKSHWVSEARQFQNRINQNESRLFWMGLILCPLIWSSMFVF 547
           D+G +  + EAR  Q +   + SR+++  ++LC L  +++ VF
Sbjct: 446 DHGATRALREARNSQEKTCFSTSRMYFTLILLCLLFATTVVVF 488


>U13070-10|AAC46644.3|  294|Caenorhabditis elegans Hypothetical
           protein F01F1.10a protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 401 WWNYVDDNGKSHWVSEARQFQNR 469
           W++ V DNGK HW +E  +   +
Sbjct: 187 WYDSVLDNGKLHWQNELNEMNRK 209


>U13070-9|AAU05578.1|  388|Caenorhabditis elegans Hypothetical
           protein F01F1.10c protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 401 WWNYVDDNGKSHWVSEARQFQNR 469
           W++ V DNGK HW +E  +   +
Sbjct: 142 WYDSVLDNGKLHWQNELNEMNRK 164


>U13070-8|AAN84828.1|  433|Caenorhabditis elegans Hypothetical
           protein F01F1.10b protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 401 WWNYVDDNGKSHWVSEARQFQNR 469
           W++ V DNGK HW +E  +   +
Sbjct: 187 WYDSVLDNGKLHWQNELNEMNRK 209


>AB079783-1|BAB84821.1|  433|Caenorhabditis elegans
           endo-beta-N-acetylglucosaminidase protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 401 WWNYVDDNGKSHWVSEARQFQNR 469
           W++ V DNGK HW +E  +   +
Sbjct: 187 WYDSVLDNGKLHWQNELNEMNRK 209


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 100 KYFIVKYYFHCVTICILKV 156
           KYFI+ + F CVT C LK+
Sbjct: 11  KYFII-FTFFCVTFCFLKL 28


>Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical
           protein B0001.8 protein.
          Length = 490

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 560 ARTGKRRTCWTRSAGRGSGPSRTAGSHSGLSDSGTV 453
           +R+ +RR   TRS  RG+ P   A S+SGLS +  +
Sbjct: 276 SRSAERRRSPTRSY-RGASPRNLARSNSGLSTTSKI 310


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 519  GQRIRPIQNSRLSFWFIRFWNCRASETQCDFPLSST*FH 403
            GQRI+P +  R S W+   W  R  E+   F    T FH
Sbjct: 944  GQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDHLTRFH 982


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 519  GQRIRPIQNSRLSFWFIRFWNCRASETQCDFPLSST*FH 403
            GQRI+P +  R S W+   W  R  E+   F    T FH
Sbjct: 944  GQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDHLTRFH 982


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,133,622
Number of Sequences: 27780
Number of extensions: 310990
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)