Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J14
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    28   0.056
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 501 IQNSRLSFWFIRFWNCRASETQCDFPLSST*FHHLKPTSRRPLMFLTVQKSADSNNT 331
           ++N+R + WF+ FW       QC +P +S     + P ++    F + +K     NT
Sbjct: 417 VENNRRNPWFVEFWE---HHFQCRYPNAS-----VTPYNKNYTKFCSTEKRLTKQNT 465


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 103 YFIVKYYFHCVTICIL 150
           YF+++ Y  CV I +L
Sbjct: 246 YFLIQVYVPCVLIVVL 261


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = -3

Query: 340 QQHHQNKAGDE*VREPATKNVH*YSR*AENQMEEHYVW 227
           ++HH          EP   +   Y R  E +  E+Y W
Sbjct: 153 KRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNW 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,320
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)