Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J13
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 291 6e-80
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 291 6e-80
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 291 6e-80
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 76 4e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 71 1e-13
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 68 1e-12
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.11
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.0
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 7.0
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 9.3
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 9.3
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 9.3
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 291 bits (713), Expect = 6e-80
Identities = 130/173 (75%), Positives = 150/173 (86%)
Frame = +1
Query: 10 FKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG 189
++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 268
Query: 190 ILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 369
++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSK
Sbjct: 269 VIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSK 328
Query: 370 NNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIEETVDRRT 528
N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ E +DRR+
Sbjct: 329 NDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRS 381
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 291 bits (713), Expect = 6e-80
Identities = 130/173 (75%), Positives = 150/173 (86%)
Frame = +1
Query: 10 FKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG 189
++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 268
Query: 190 ILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 369
++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSK
Sbjct: 269 VIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSK 328
Query: 370 NNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIEETVDRRT 528
N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ E +DRR+
Sbjct: 329 NDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRS 381
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 291 bits (713), Expect = 6e-80
Identities = 130/173 (75%), Positives = 150/173 (86%)
Frame = +1
Query: 10 FKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG 189
++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 268
Query: 190 ILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 369
++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSK
Sbjct: 269 VIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSK 328
Query: 370 NNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIEETVDRRT 528
N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ E +DRR+
Sbjct: 329 NDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRS 381
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 75.8 bits (178), Expect = 4e-15
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Frame = +1
Query: 49 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 228
+G L+E LD++ R + +P+ YK +GT+ G++E G +K + V+ P
Sbjct: 447 QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPI 504
Query: 229 NITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTA 405
N T EV ++ + E + ++ GD V V+ +++ GYV +KN P F A
Sbjct: 505 NQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIA 562
Query: 406 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIEETVDR 522
Q+ +L P ++ GY+ V+ HTA FA++ +D+
Sbjct: 563 QIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK 601
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.5 bits (165), Expect = 1e-13
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +1
Query: 61 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPAN 231
L+EA+D+ + P R TD + ++DV+ I G GTV GRVE G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 232 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 354
+ T V +EM + L AV GDN G ++++ ++L+RG +
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 67.7 bits (158), Expect = 1e-12
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Frame = +1
Query: 49 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 228
+G L+ ALD ++PP +P K LRL + DVY+ TV GRVE G ++ V+ +
Sbjct: 383 KGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSS 441
Query: 229 NITTEVKSVEMHHEALQE-AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTA 405
VK+V + + AV GD V + ++ V +LR G + + + NP R F A
Sbjct: 442 QEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE-NPVRRVRSFVA 500
Query: 406 QVIVLNHPGQISNGYTPVL 462
++ + G I +G T VL
Sbjct: 501 EIQTFDIHGPILSGSTLVL 519
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.1 bits (67), Expect = 0.11
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -1
Query: 338 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 159
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 158 PIPPILYTSC 129
+P +C
Sbjct: 115 YVPYTSSVAC 124
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 260 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 391
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 257 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 141
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 290 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 469
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 470 TQPT*PAN 493
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 381 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC 497
+GS ++S + +S + I CIG+ SPH +C
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVC 128
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 19 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 126
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 122 FPCKTYTKSAVLEQYPW 172
FPCK S L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 189 YPKAWYCCRFCPC*HH 236
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 530 PVRRSTVSSISANLQAMWAVWQSNTGVY 447
P +RST S ++ L W + N GVY
Sbjct: 330 PKKRSTHSYVAKILNPEWDAFLKNEGVY 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,600
Number of Sequences: 5004
Number of extensions: 49641
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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