Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J12
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 70 5e-14
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 0.46
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 0.46
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 0.80
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 1.4
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 1.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 3.2
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 23 4.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 23 4.3
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 23 7.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 23 7.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 23 7.4
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 23 7.4
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 23 7.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 22 9.8
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 22 9.8
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 22 9.8
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 22 9.8
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 69.7 bits (163), Expect = 5e-14
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Frame = +1
Query: 31 SADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLSEFGNMALVE 210
SADGSC+L G SK+VCLY + +LIKKF +++N SL V + +N R ++E G++ L++
Sbjct: 580 SADGSCVLSAGTSKYVCLYDIITGVLIKKFQLSKNESLQGVQEMLNSRKMTEAGSIELID 639
Query: 211 ---QREDLE 228
+ DLE
Sbjct: 640 TQGEESDLE 648
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 0.46
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 37 DGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVN 156
DGS GGN VCL+ D + +V QN ++ A++
Sbjct: 333 DGSQFASGGNDNRVCLFKGSD-LRQPLYVWQQNAAVKALS 371
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 0.46
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 37 DGSCILGGGNSKHVCLYSVKDSILIKKF 120
DG+ GGN VC++ + DS+ KKF
Sbjct: 300 DGTQFASGGNDNLVCIFDI-DSLENKKF 326
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 0.80
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 171 TIYKIVNSIQRSVLSYDKLLDQNRIL 94
T++KI S ++ L+++KLLD + IL
Sbjct: 828 TVFKIAASPEKVKLAWEKLLDTHTIL 853
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 106 LIKKFVI-TQNRSLDAVNDFINRRLLSEF 189
++KKF+I +++ ++ V DF +R L EF
Sbjct: 46 ILKKFLIDSRDYKVEVVQDFCSRSLTDEF 74
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 183 TQQATIYKIVNSIQRSVLSYDKLLDQNRILDAV 85
T++ + +V+++ R YD +LD N +LD+V
Sbjct: 214 TEKLKMLPLVDAVLRKTHLYDTILD-NNVLDSV 245
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 145 DAVNDFINRRLLSEFGNMALVEQREDLEGGDVNI 246
D ND + L E N +L++++ED++ + NI
Sbjct: 658 DENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNI 691
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 23.4 bits (48), Expect = 4.3
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +1
Query: 10 KLHDYMLSADGSCILGGGNSKHVCLYSVK 96
+++ S DG ++ G + VCL+ V+
Sbjct: 378 EIYSLDFSKDGKTLVSGSGDRTVCLWDVE 406
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 229 LPGPRAVPPAPCYRTHST 176
+PGP +VP AP R ST
Sbjct: 250 VPGPISVPSAPYGRASST 267
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 22.6 bits (46), Expect = 7.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 25 MLSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLSEF 189
++S D CIL + KH Y K+ K + + +L + FI +L E+
Sbjct: 872 LISPDSVCILSKEDKKHWLKYK-KNRSTFAKLLFSTWSNLPSDIGFILECMLKEY 925
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 22.6 bits (46), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 148 AVNDFINRRLLSEFGNMALVEQREDLEGGDVN 243
A+ND LS G + E +D+EGG +N
Sbjct: 573 AINDMQIVVALSN-GELVYFEMSDDVEGGQLN 603
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -1
Query: 159 IVNSIQRSVLSYDKLLDQNRILDAVEADMFRV 64
+V ++ R+ +S+ + RIL+ +D++RV
Sbjct: 981 MVKAVLRAPMSFFETTPTGRILNRFSSDVYRV 1012
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +1
Query: 85 YSVKDSILIKKFVITQNRSLDAVNDFINR 171
Y + +SIL F+I+ +D++ ++N+
Sbjct: 345 YELWNSILQNHFIISSRNIIDSLGLYVNK 373
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 22.6 bits (46), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Frame = +1
Query: 13 LHDYMLSADGS--CILG-----GGNSKHVCLYSVKDSILIKK 117
++D L++DG+ I+G KH+ +YSV+ IKK
Sbjct: 338 IYDMALTSDGTKLYIVGFEQLINAEDKHIAIYSVETRECIKK 379
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 246 DVHIPTFQVLALFHQRHVTELTQQAT--IYKI 157
+++ P+F+++ALF + + L + +T +YK+
Sbjct: 541 EMNQPSFEIIALFDELQLQILNELSTQSLYKL 572
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 22.2 bits (45), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 219 LALFHQRHVTELTQQATIYKIVNSIQRSVLSYDKLLDQNRIL 94
LA H + T LTQ+ + + + VLSY L+ + I+
Sbjct: 164 LADDHLKWFTYLTQEFYQFANIPKLPSHVLSYHSLIPRRMIV 205
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = -1
Query: 246 DVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSY 124
D+H+ +++LA + T+ I+ SVL+Y
Sbjct: 574 DLHLKPYRILATGPTHGAVQFVPSKTLATILAEYHGSVLAY 614
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -1
Query: 195 VTELTQQATIYKIVNSIQRSVLSYDKLLDQNRILDAVEAD 76
+ E + +Y N ++ + DKL+DQ D E +
Sbjct: 1 MAEEEENQELYIAENEVEEVIKDNDKLMDQGVTEDEAEQE 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,886
Number of Sequences: 5004
Number of extensions: 16832
Number of successful extensions: 68
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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