Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J12
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 72 6e-14
04_04_1003 - 30031099-30031194,30031274-30031352,30031566-300318... 29 0.69
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 29 0.69
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137... 27 1.6
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317... 27 1.6
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 27 2.8
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 27 2.8
03_04_0039 - 16726375-16726719 26 3.7
01_06_0303 + 28324155-28325045,28326208-28326321 26 4.9
11_05_0045 - 18577329-18578338,18578704-18578917 25 6.4
09_04_0506 - 18188785-18190599 25 6.4
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 25 6.4
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147... 25 6.4
03_05_0883 + 28483429-28484385,28485090-28485398 25 6.4
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 25 6.4
01_06_0611 + 30597855-30598189,30600818-30600995 25 6.4
12_01_0387 - 3028922-3029689,3032116-3032832 25 8.5
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 25 8.5
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 25 8.5
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 72.1 bits (169), Expect = 6e-14
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +1
Query: 31 SADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLSEFGNMALVE 210
SADG+ IL GGNSK++C+Y V + +L+++F IT+N SLD V DF+N + +++ G + L++
Sbjct: 618 SADGTYILAGGNSKYICMYDVGEQVLLRRFQITRNLSLDGVLDFLNSKKMTDAGALDLID 677
Query: 211 QRE-DLEGG 234
+ D+E G
Sbjct: 678 DEDSDVEEG 686
>04_04_1003 -
30031099-30031194,30031274-30031352,30031566-30031819,
30032003-30032029,30032135-30032761
Length = 360
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 234 PTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSYD 121
P L QR++ E + +KI+N ++R+++ YD
Sbjct: 185 PLLGKFGLLEQRNIEEKVLELNSHKIINLLKRALVGYD 222
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 244 CSHPHL---PGPRAVPPAPCYRTHSTG 173
CS HL P P PP P Y+ H+TG
Sbjct: 15 CSRRHLFFAPPPPPPPPMPAYQYHATG 41
>04_04_1667 +
35211776-35212132,35212640-35212727,35213573-35213705,
35213806-35214616
Length = 462
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 145 DAVNDFINRRLLSEFGNMALVEQREDLEGGDVN 243
D DF + R SEFG AL Q ++ +G DVN
Sbjct: 307 DHSTDFSSSRF-SEFGGGALQGQEQEQDGDDVN 338
>01_04_0102 +
16030094-16030462,16030595-16030714,16031715-16031792,
16032760-16032933,16033844-16033921,16034338-16034510,
16034757-16034912,16036460-16036621,16036815-16036826,
16036947-16036962,16037663-16037875
Length = 516
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 31 SADGSCILGGGNSKHVCLYSVKDSILIKK 117
SADGS ++GG H+ +Y+ + I K
Sbjct: 112 SADGSLLIGGFRGSHIRIYNAEKKWTIHK 140
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 198 GAGGTARGPGRWGCEH 245
GAGG + GRWG +H
Sbjct: 33 GAGGVGQAGGRWGRDH 48
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 27 VISRRFLYFGWR*L*TCLPLQRQGFDSDQEVC 122
++SRR + FGWR L C L Q + D E C
Sbjct: 361 MLSRRTVSFGWRLLEFCY-LNNQLVERDVEAC 391
>03_04_0039 - 16726375-16726719
Length = 114
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 162 KIVNSIQRSVLSYDKLLDQNRIL 94
K++++ Q S + LLDQNR+L
Sbjct: 15 KVLHAFQTSFVQVQSLLDQNRVL 37
>01_06_0303 + 28324155-28325045,28326208-28326321
Length = 334
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 13 LHDYMLSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLS 183
+ D +LS+DG L G + L+ + + ++FV L NR+++S
Sbjct: 78 VQDVVLSSDGQFALSGSWDGELRLWDLSTGVTTRRFVGHDKDVLSVAFSVDNRQIVS 134
>11_05_0045 - 18577329-18578338,18578704-18578917
Length = 407
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 166 NRRLLSEFGNMA 201
NRR+L EFGNMA
Sbjct: 349 NRRVLGEFGNMA 360
>09_04_0506 - 18188785-18190599
Length = 604
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 232 HLPGPRAVPPAP 197
H+PG AVPPAP
Sbjct: 109 HIPGVAAVPPAP 120
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 133 NRSLDAVNDFINRRLLSEFGNMALVEQREDLEGGD 237
+R + AVN F+N + GN L + +D++ D
Sbjct: 1020 HRDIRAVNIFLNEDFEALVGNFCLAKLEDDMDTDD 1054
>05_06_0096 +
25513535-25514024,25514139-25514236,25514395-25514783,
25515485-25515599,25515816-25515917,25516584-25516734,
25517162-25517250,25517518-25517566,25517723-25517763,
25517929-25518116,25518285-25518402,25518900-25519079,
25519172-25519294,25519368-25519455,25519549-25519679,
25519768-25519866,25520822-25521253
Length = 960
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 9/43 (20%)
Frame = -1
Query: 204 QRHVTELTQQATIYKI---------VNSIQRSVLSYDKLLDQN 103
+RH+TELTQ+ K+ + I + +L+++K L++N
Sbjct: 384 KRHITELTQRFDGRKVMLGVDRLDMIKGIPQKILAFEKFLEEN 426
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 238 HPHLPGPRAVPPAP 197
HP P PRA+PP P
Sbjct: 394 HPPPPPPRALPPVP 407
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 28 LSADGSCILGGGNSKHVCLYSVKDSILIKKF 120
+SADG + GG +H+ L+ V+ I+ F
Sbjct: 227 VSADGRYLASGGLDRHIHLWDVRSREHIQAF 257
>01_06_0611 + 30597855-30598189,30600818-30600995
Length = 170
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Frame = -2
Query: 80 QTCLELPPPKI--QEPSA 33
QTCL++PPP + Q+P+A
Sbjct: 11 QTCLQVPPPVLEQQQPAA 28
>12_01_0387 - 3028922-3029689,3032116-3032832
Length = 494
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 121 VITQNRSLDAVNDFINRRLLSEFGNMALVEQREDLEGG 234
V+ ++R L A + ++ + G V+++ED EGG
Sbjct: 159 VVMRSRYLKAAQELLDEAVSVSKGAATAVKKKEDSEGG 196
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 235 PHLPGPRAVPPAPCYRTH 182
P P RAVP PC+R H
Sbjct: 216 PPSPHGRAVPGPPCHRHH 233
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 238 HPHLPGPRAVPPAPCYRTH 182
H H P P VPP P TH
Sbjct: 81 HHHPPPPPPVPPCPPNATH 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,580
Number of Sequences: 37544
Number of extensions: 125104
Number of successful extensions: 506
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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