Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J12
         (246 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    68   8e-13
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AC025716-6|AAK95889.1|  401|Caenorhabditis elegans Hypothetical ...    27   2.3  
U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    26   4.1  
Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U80447-5|AAB37809.1|  439|Caenorhabditis elegans Temporarily ass...    25   7.1  

>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 32/64 (50%), Positives = 44/64 (68%)
 Frame = +1

Query: 31  SADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLSEFGNMALVE 210
           S DG+ +L GG S + CLYSV + +++KK+ IT NRSLD V    NRR  +EFGNM LV+
Sbjct: 597 SPDGNLLLAGGESNNFCLYSVPERMILKKWQITANRSLDGVILDFNRRNFTEFGNMQLVD 656

Query: 211 QRED 222
             ++
Sbjct: 657 TSDE 660


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 162  KIVNSIQRSVLSYDKLLDQNRILD 91
            K+VNSIQR V  Y  ++  +++LD
Sbjct: 1386 KLVNSIQRDVKMYGSVVSGDQLLD 1409


>AC025716-6|AAK95889.1|  401|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.9 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 40  GSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLS 183
           G  +  G    HV  Y+V D  LI + ++T+  S+  +  + NR + S
Sbjct: 292 GKAVFVGFEDGHVAAYNVSDRRLIGE-IVTKKGSVTCLKYYCNRLIAS 338


>U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical
           protein F33G12.2 protein.
          Length = 305

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 31  SADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRL 177
           + DG+  +  G+ K V L++   S L+K +  T N  LDA +   N ++
Sbjct: 25  NVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSDNSQI 73


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 198 GAGGTARGPGRWG 236
           G GG   GPGRWG
Sbjct: 21  GPGGWGGGPGRWG 33


>Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical
           protein T26E4.5 protein.
          Length = 339

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 216 ALFHQRHVTELTQQATIYKIVNSIQRSVLSYDKLLDQNRILDAVEADMFR 67
           +   +R VTEL ++ TI++I+     S+L     L +  +++A +++  R
Sbjct: 59  SFIEKRRVTELKEKETIFEII-----SLLGIANTLQRTPVINATDSNNIR 103


>U80447-5|AAB37809.1|  439|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 345 protein.
          Length = 439

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/41 (24%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 37  DGSCILGGGNSKHVCLYSVKDSILIKKFVIT-QNRSLDAVN 156
           DG+  + GG ++ + LY+++   L++K ++    R+++ V+
Sbjct: 178 DGTEFVVGGENQLLTLYAIEKGALVEKLILRGHERAVECVS 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,762,142
Number of Sequences: 27780
Number of extensions: 98608
Number of successful extensions: 349
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)