Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J11
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 136 1e-33
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.015
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 0.98
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 0.98
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 1.3
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 1.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 3.0
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 4.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 5.2
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 5.2
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 5.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 6.9
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 24 9.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 9.1
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 136 bits (329), Expect = 1e-33
Identities = 63/142 (44%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Frame = +1
Query: 4 RGTDLITPQKMLKTKAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSL 183
R D T + K FT+ICYSADGSC+L G SK+VCLY + +LIKKF +++N SL
Sbjct: 558 RFDDARTAENSSLNKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKFQLSKNESL 617
Query: 184 DAVNDFINRRLLSEFGNMALVE---QREDLEGGDVNIRLPGVKEGDMADRRVKPEVRVHC 354
V + +N R ++E G++ L++ + DLE ++ LPG + GD++ R+ +PE+ H
Sbjct: 618 QGVQEMLNSRKMTEAGSIELIDTQGEESDLE-DRIDRTLPGARRGDLSARKTRPEIICHG 676
Query: 355 IRFSPTGESFAVATTEGLLVYS 420
++FSP+G +FA ATTEGL++YS
Sbjct: 677 VQFSPSGGAFAAATTEGLMIYS 698
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 33.5 bits (73), Expect = 0.015
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -1
Query: 330 NPPVGHVPLLDSRQTDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSYDKLL 151
NP G VPL+ QTD +P + FH +L + A++ + S R+VL+ D +
Sbjct: 173 NPDTGSVPLIHPEQTDRGLP-YAPDEKFHNSGSLKLPKGASLEDLSRSPSRAVLNEDGNV 231
Query: 150 DQ 145
D+
Sbjct: 232 DE 233
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 0.98
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 61 ICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVN 195
+ ++ DGS GGN VCL+ D + +V QN ++ A++
Sbjct: 328 LTWNHDGSQFASGGNDNRVCLFKGSD-LRQPLYVWQQNAAVKALS 371
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.5 bits (58), Expect = 0.98
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 28 QKMLKTKAFT--TICYSADGSCILGGGNSKHVCLYSVKDSIL 147
Q++LK + T TI +S D IL G + VCL+ +++L
Sbjct: 571 QQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAENLL 612
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 67 YSADGSCILGGGNSKHVCLYSVKDSILIKKF 159
++ DG+ GGN VC++ + DS+ KKF
Sbjct: 297 WNYDGTQFASGGNDNLVCIFDI-DSLENKKF 326
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 346 VHCIRFSPTGESFAVATTEGLLVY 417
+ CIRF+ G AVAT G +Y
Sbjct: 67 ISCIRFTYDGSCLAVATEAGTFLY 90
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 210 TIYKIVNSIQRSVLSYDKLLDQNRIL 133
T++KI S ++ L+++KLLD + IL
Sbjct: 828 TVFKIAASPEKVKLAWEKLLDTHTIL 853
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC subunit
Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -2
Query: 410 SSPSVVATAKLSPVGENLMQ---CTLTSGLTLLSAMSPSLTP 294
SSP + +P+ L++ C LTS L ++ ++S ++TP
Sbjct: 895 SSPHTQISLDKNPLNRRLLEHVCCDLTSKLLIVVSLSNTITP 936
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 390 DGETFASRGKPYAVHSHLGFNPPVGHVPLLDSRQTDVHIPT 268
DG T S ++++ GF PP + + SR H P+
Sbjct: 124 DGSTLNSNNTTQQLNNNNGFQPPPQNPGISKSRIAQYHQPS 164
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 306 LLDSRQTDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSY 163
LL + D+H+ +++LA + T+ I+ SVL+Y
Sbjct: 567 LLKKEKLDLHLKPYRILATGPTHGAVQFVPSKTLATILAEYHGSVLAY 614
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 145 LIKKFVI-TQNRSLDAVNDFINRRLLSEF 228
++KKF+I +++ ++ V DF +R L EF
Sbjct: 46 ILKKFLIDSRDYKVEVVQDFCSRSLTDEF 74
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 222 TQQATIYKIVNSIQRSVLSYDKLLDQNRILDAV 124
T++ + +V+++ R YD +LD N +LD+V
Sbjct: 214 TEKLKMLPLVDAVLRKTHLYDTILD-NNVLDSV 245
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 24.2 bits (50), Expect = 9.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 67 YSADGSCILGGGNSKHVCLYSVK 135
+S DG ++ G + VCL+ V+
Sbjct: 384 FSKDGKTLVSGSGDRTVCLWDVE 406
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 184 DAVNDFINRRLLSEFGNMALVEQREDLEGGDVNIR 288
D ND + L E N +L++++ED++ + NI+
Sbjct: 658 DENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQ 692
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,661
Number of Sequences: 5004
Number of extensions: 36070
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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