Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J11
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 121 2e-28
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 37 0.006
06_03_0662 - 23229957-23230204,23231021-23231160,23231257-232313... 32 0.18
02_01_0790 + 5925048-5925165,5926133-5926268,5926832-5926913,592... 32 0.18
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317... 31 0.42
04_04_1003 - 30031099-30031194,30031274-30031352,30031566-300318... 30 0.96
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 29 2.2
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137... 28 2.9
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 28 2.9
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 28 3.9
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 28 3.9
07_03_0971 + 23038409-23039134,23040321-23040611 27 5.1
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 6.8
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 27 9.0
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 121 bits (292), Expect = 2e-28
Identities = 61/129 (47%), Positives = 90/129 (69%), Gaps = 4/129 (3%)
Frame = +1
Query: 46 KAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLSE 225
K FTT+CYSADG+ IL GGNSK++C+Y V + +L+++F IT+N SLD V DF+N + +++
Sbjct: 610 KYFTTLCYSADGTYILAGGNSKYICMYDVGEQVLLRRFQITRNLSLDGVLDFLNSKKMTD 669
Query: 226 FGNMALVEQRE-DLEGG-DVNIR--LPGVKEGDMADRRVKPEVRVHCIRFSPTGESFAVA 393
G + L++ + D+E G D R L G MA+R +P R C++F+PTG SFA A
Sbjct: 670 AGALDLIDDEDSDVEEGIDQQTRGNLGLGLPGSMANRG-RPIARTKCVKFAPTGRSFAAA 728
Query: 394 TTEGLLVYS 420
TT+G+L+YS
Sbjct: 729 TTDGVLLYS 737
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 37.1 bits (82), Expect = 0.006
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = -1
Query: 333 FNPPVGHVP--LLDSRQTDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSV-LSY 163
FN G P LL + D+ P + L R ++LT Q + +S R V Y
Sbjct: 465 FNATPGSTPHGLLAMGKVDLMHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGAGY 524
Query: 162 DKLLDQNRILDAVEADMFRVTATQNTGTVG*ITYSRESLGLEHLL 28
D + R+ A +F TGT+ I Y+ +SL +E LL
Sbjct: 525 DLEHQRRRMDPATNEPLFTNCTRDFTGTIDYIFYTADSLSVESLL 569
>06_03_0662 -
23229957-23230204,23231021-23231160,23231257-23231394,
23231501-23231676,23232071-23232152,23233531-23233666,
23237028-23237145
Length = 345
Score = 32.3 bits (70), Expect = 0.18
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 346 VHCIRFSPTGESFAVATTEGLL 411
VHC+RF+P GES+A + +G +
Sbjct: 273 VHCVRFAPGGESYASGSEDGTI 294
>02_01_0790 +
5925048-5925165,5926133-5926268,5926832-5926913,
5927772-5927947,5928594-5928680,5928817-5928956,
5929546-5929784
Length = 325
Score = 32.3 bits (70), Expect = 0.18
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 346 VHCIRFSPTGESFAVATTEGLL 411
VHC+RF+P GES+A + +G +
Sbjct: 256 VHCVRFAPGGESYASGSEDGTI 277
>01_04_0102 +
16030094-16030462,16030595-16030714,16031715-16031792,
16032760-16032933,16033844-16033921,16034338-16034510,
16034757-16034912,16036460-16036621,16036815-16036826,
16036947-16036962,16037663-16037875
Length = 516
Score = 31.1 bits (67), Expect = 0.42
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Frame = +1
Query: 67 YSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFI---NRRLLSEFGNM 237
+SADGS ++GG H+ +Y+ + I K IT + V+D ++R L+ + ++
Sbjct: 111 FSADGSLLIGGFRGSHIRIYNAEKKWTIHK-DITCKKLRWTVSDIALSPDQRYLA-YSSL 168
Query: 238 ALVEQREDLEGG--DVNIRLPGVKEG-DMADRRVKPEVRVHCIRFSPTGESFAVA-TTEG 405
+ + D++ G + + + V EG + ++ + ++FS G V E
Sbjct: 169 SPIVHMVDIQNGMRESHANITQVHEGLEFSNDDDGFSFAIFSVKFSKDGRELVVGNNNES 228
Query: 406 LLVY 417
+ +Y
Sbjct: 229 ICIY 232
>04_04_1003 -
30031099-30031194,30031274-30031352,30031566-30031819,
30032003-30032029,30032135-30032761
Length = 360
Score = 29.9 bits (64), Expect = 0.96
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 288 TDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSYD 160
T P L QR++ E + +KI+N ++R+++ YD
Sbjct: 180 TSTMFPLLGKFGLLEQRNIEEKVLELNSHKIINLLKRALVGYD 222
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 283 CSHPHL---PGPRAVPPAPCYRTHSTG 212
CS HL P P PP P Y+ H+TG
Sbjct: 15 CSRRHLFFAPPPPPPPPMPAYQYHATG 41
>04_04_1667 +
35211776-35212132,35212640-35212727,35213573-35213705,
35213806-35214616
Length = 462
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 184 DAVNDFINRRLLSEFGNMALVEQREDLEGGDVNIRLP 294
D DF + R SEFG AL Q ++ +G DVN P
Sbjct: 307 DHSTDFSSSRF-SEFGGGALQGQEQEQDGDDVNKERP 342
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 25 PQKMLKTKAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKF 159
P ++K + SADG + GG +H+ L+ V+ I+ F
Sbjct: 213 PLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAF 257
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 27.9 bits (59), Expect = 3.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 442 CRRCRRSGCKRAAP 401
CRRCRR C R AP
Sbjct: 97 CRRCRRRRCSRLAP 110
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 115 VCLYSVKDSILIKKFVITQNRSLDAV-NDFINRRLLSEFGNMALVEQREDLEGGDVNIRL 291
+C+ D+I+ K V+ Q R DA+ ++ + + G+ L++ +D E R+
Sbjct: 269 LCISLAMDTIIRKTNVLRQGRWKDAIRSELVLDSTTGQTGSAPLMQLGQDGEYDLSGSRI 328
Query: 292 PGVK 303
PG+K
Sbjct: 329 PGLK 332
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 322 RRVKPEVR-VHCIRFSPTGESFAVATTEG 405
R P R V C+RFSP G A A+ +G
Sbjct: 19 RAATPHSRAVSCVRFSPCGRLLATASLDG 47
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 214 LLSEFGNMALVEQREDLEGGDVNIRLPGVKEGDMADRRVKPEVRVHCI 357
L+ GN+ V + LE GD+ RL +++GD+ P V H +
Sbjct: 371 LVRRNGNLIFVRKANQLEIGDIAYRL--LQDGDLVLVNSPPSVHQHSL 416
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 237 GAGGTARGPGRWGCEH 284
GAGG + GRWG +H
Sbjct: 33 GAGGVGQAGGRWGRDH 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,526,104
Number of Sequences: 37544
Number of extensions: 285177
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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