Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J10
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    28   0.81 
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   3.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.3  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   4.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.5  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   10.0 

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 168 NFR*KKTS*ENHSMVVGHFLMMTAWVATTLKFENLLPNT 284
           NF+  +T  EN +M +    +++A       FEN LPNT
Sbjct: 308 NFQRAQTKIENDNMPLNRPYVLSATARNESSFENTLPNT 346


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 446 GFSNRRCNIANYFLHRYTLSALTTISPDVKRRCG 345
           GF  R+     Y +HR  L AL    PD +   G
Sbjct: 355 GFETRKAFFLGYMIHRMLLCALERREPDDRDHFG 388


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 295 KHLLVFGNRFSNLRVVATQAVII 227
           KHL V GN  +NL + +T  V++
Sbjct: 857 KHLFVSGNELANLSISSTAQVLL 879


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 352 DVVQDGEHTKPRF*SDAAGKHLLVFGNRFSNLRVV 248
           DVV+  +  +  F S   GK+ +V G   S++R +
Sbjct: 27  DVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTI 61


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326  SVFTILDHIVA*HQVRLWSKH*VCTGVKN-NLRCCIGDLKNHEIFSSLLSPL 478
            SVFTI D ++      L  K  +C+G  +  L CC   L+   + S  L+ L
Sbjct: 898  SVFTINDMLIDEMTAYLSKKESLCSGTFSCLLACCNSVLRTQNLTSESLNKL 949


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 401 RYTLSALTTISPDVKR 354
           RYTLS  + +SPD KR
Sbjct: 405 RYTLSGGSALSPDTKR 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,224
Number of Sequences: 5004
Number of extensions: 50122
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)