Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J10
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0144 - 23095172-23095830,23095915-23097265                       28   5.8  
02_05_0743 + 31425827-31425888,31426733-31426759,31426840-314269...    27   7.7  

>04_04_0144 - 23095172-23095830,23095915-23097265
          Length = 669

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 25  RVSLKSKMRDH*VLHLVNCDDGPVSSAAGFRVNRRWFDP 141
           R S+ +++ DH + HLV     P S  AG+R      DP
Sbjct: 500 RSSVDARVADHGLAHLVGPAGAPSSRVAGYRAPEVVADP 538


>02_05_0743 +
           31425827-31425888,31426733-31426759,31426840-31426962,
           31427252-31427492,31427655-31427780
          Length = 192

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 268 FSNLRVVATQ-AVIIRKWPTTMLWFSHDVFFHLKFRPILE-LDRW 140
           ++++R + T+ AV  ++W T  + +S    F L F P+LE L  W
Sbjct: 31  YASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLW 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,022
Number of Sequences: 37544
Number of extensions: 323549
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)