Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J10
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical ...    30   0.98 
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    30   0.98 
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   5.2  

>AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical
           protein C10F3.4a protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 13  FSHLRVSLKSKMRDH*VLHLVNCDDGPVSS 102
           F+HLR +  +K+ DH +L  + CD  P+S+
Sbjct: 132 FNHLRFNF-AKLHDHEILFYLKCDTDPISN 160


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
           protein C10F3.4b protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 13  FSHLRVSLKSKMRDH*VLHLVNCDDGPVSS 102
           F+HLR +  +K+ DH +L  + CD  P+S+
Sbjct: 156 FNHLRFNF-AKLHDHEILFYLKCDTDPISN 184


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 483 YPSGDNKELKISWFFKSPMQHRK 415
           YPSG+ +E+K+   F SP  H++
Sbjct: 322 YPSGNKEEMKLQSDFSSPQGHKR 344


>Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 468 NKELKISWFFKSPMQHRKLFFTPVHTQCFDHNL 370
           N  +K+ ++  +PM   K+  TP  T+  D+N+
Sbjct: 174 NTPVKLQYYTANPMVRTKIILTPDSTEFMDYNV 206


>Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 468 NKELKISWFFKSPMQHRKLFFTPVHTQCFDHNL 370
           N  +K+ ++  +PM   K+  TP  T+  D+N+
Sbjct: 174 NTPVKLQYYTANPMVRTKIILTPDSTEFMDYNV 206


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 324 LVCSPSWTTSSLNIR*DCGQSTECVPV*KIICDVASAI*KTTKSLV 461
           LV SP+ T +  ++  DC  +  C PV  + C       KT K++V
Sbjct: 100 LVLSPTGTLTICDLTEDCPSTHICNPVHGVCCTKLPTCPKTKKTMV 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,753
Number of Sequences: 27780
Number of extensions: 285777
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)