Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J10
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.13 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 141 HLSNSKIGLNFR*KKTS*ENHSMVVGHFLMMTAWVATTLKFENLLPNTNRC 293
           H +  +I        T  ENH   +G+   +  WV   LK ++L    N C
Sbjct: 83  HSTTREIAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQRINSC 133



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 212 GRPFSNDDSLGSYYPQ 259
           G+ F+NDD + SY  Q
Sbjct: 293 GKNFNNDDDIKSYLIQ 308


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 423 VASAI*KTTKSLVLYYHHWDSDT 491
           VAS++  T   L+L YHH ++DT
Sbjct: 305 VASSVVSTI--LILNYHHRNADT 325


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 19  HLRVSLKSKMRDH*---VLHLVNCDDGPVSSAAGFRVNRRWFDP 141
           HLR  L+  +  +    +L L + D+  +     F + ++W+DP
Sbjct: 128 HLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDP 171


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  VLHLVNCDDGPVSSAAGFRVNRRWFDP 141
           +L L + D+  +     F + ++W+DP
Sbjct: 94  LLSLASPDESSLKYEVEFLLQQQWYDP 120


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  VLHLVNCDDGPVSSAAGFRVNRRWFDP 141
           +L L + D+  +     F + ++W+DP
Sbjct: 94  LLSLASPDESSLKYEVEFLLQQQWYDP 120


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  VLHLVNCDDGPVSSAAGFRVNRRWFDP 141
           +L L + D+  +     F + ++W+DP
Sbjct: 94  LLSLASPDESSLKYEVEFLLQQQWYDP 120


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 413 YFLHRYTLSALTTISP 366
           YFL  Y+L   TT SP
Sbjct: 371 YFLGNYSLVPTTTASP 386


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 345  SRMVNTLNLGSKVMLPE 295
            S M+NT   GSK ++PE
Sbjct: 1449 SDMLNTRTKGSKPIIPE 1465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,601
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)