Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J09
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 262 2e-71
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 262 2e-71
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 262 2e-71
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 151 5e-38
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 149 2e-37
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 83 3e-17
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 56 2e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 47 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 46 4e-06
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 38 1e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 38 6e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 38 6e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 32 0.037
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.086
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.086
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.26
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.46
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 1.4
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 2.4
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 26 2.4
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 2.4
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 3.2
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 3.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 4.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 4.3
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 5.6
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 25 5.6
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 5.6
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 5.6
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 24 9.8
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 9.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 262 bits (642), Expect = 2e-71
Identities = 120/135 (88%), Positives = 128/135 (94%)
Frame = +3
Query: 57 GQRKGHINIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLD 236
G+ KGHIN+VVIGHVDSGKSTTTGHLIY+CGGI KRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 2 GKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLD 61
Query: 237 KLQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
KL+AERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTG 121
Query: 417 EFEAGISKNGQTREH 461
EFEAGISK+GQTREH
Sbjct: 122 EFEAGISKDGQTREH 136
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 262 bits (641), Expect = 2e-71
Identities = 119/135 (88%), Positives = 128/135 (94%)
Frame = +3
Query: 57 GQRKGHINIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLD 236
G+ KGHIN+VVIGHVDSGKSTTTGHLIY+CGGI KRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 2 GKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLD 61
Query: 237 KLQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
KL+AERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
Query: 417 EFEAGISKNGQTREH 461
EFEAGISK+GQTREH
Sbjct: 122 EFEAGISKDGQTREH 136
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 262 bits (641), Expect = 2e-71
Identities = 119/135 (88%), Positives = 128/135 (94%)
Frame = +3
Query: 57 GQRKGHINIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLD 236
G+ KGHIN+VVIGHVDSGKSTTTGHLIY+CGGI KRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 2 GKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLD 61
Query: 237 KLQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
KL+AERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
Query: 417 EFEAGISKNGQTREH 461
EFEAGISK+GQTREH
Sbjct: 122 EFEAGISKDGQTREH 136
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 151 bits (366), Expect = 5e-38
Identities = 69/139 (49%), Positives = 96/139 (69%)
Frame = +3
Query: 45 LTKNGQRKGHINIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYA 224
L K+ K H+NIV IGHVD+GKST G++++ G + KRT+EK E+EA+E GK S+ +
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLS 288
Query: 225 WVLDKLQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 404
W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++
Sbjct: 289 WALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVIS 348
Query: 405 AGTGEFEAGISKNGQTREH 461
A GEFEAG + GQTREH
Sbjct: 349 ARRGEFEAGFERGGQTREH 367
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 149 bits (362), Expect = 2e-37
Identities = 71/141 (50%), Positives = 91/141 (64%)
Frame = +3
Query: 39 P*LTKNGQRKGHINIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFK 218
P + + K +++VV GHVDSGKST G +++E G I R+++K EA GKGSF
Sbjct: 166 PEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFS 225
Query: 219 YAWVLDKLQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 398
YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+
Sbjct: 226 YAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLV 285
Query: 399 VAAGTGEFEAGISKNGQTREH 461
V + FE G +NGQTREH
Sbjct: 286 VDSSQNNFERGFLENGQTREH 306
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 82.6 bits (195), Expect = 3e-17
Identities = 51/134 (38%), Positives = 72/134 (53%)
Frame = +3
Query: 60 QRKGHINIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLDK 239
++K H+NI IGHVD GK+T T I +C ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 240 LQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 419
E+ RGITI A ++ET + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 420 FEAGISKNGQTREH 461
QTREH
Sbjct: 154 MP-------QTREH 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 56.4 bits (130), Expect = 2e-09
Identities = 37/113 (32%), Positives = 53/113 (46%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERE 257
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 258 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 47.2 bits (107), Expect = 1e-06
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERE 257
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 258 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDFIKNMITGTSQA 380
+GITI A W+ FE Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDFTIEVERALRVL 169
Query: 381 DCAVLIVAAGTGEFEAGISKNGQTREH 461
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.6 bits (103), Expect = 4e-06
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERE 257
N VI H+D GKST + ++ G I + + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 258 RGITIDIA----LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 37.5 bits (83), Expect(2) = 1e-04
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 201 GKGSFKYAWVLDKLQAERERGITIDIALWK--FETGKYYVTIIDAPGHRDFIKNMITGTS 374
GK + A+ + + GIT I + F+ G ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 375 QADCAVLIVAAGTG 416
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 1e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 81 IVVIGHVDSGKST 119
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 38.3 bits (85), Expect = 6e-04
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGI--YKRTIEKF-EKEAQEMGKGSFKYAWVLDKLQA 248
N+ VI HVD GKST T L+ + G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 249 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
E D+ + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 38.3 bits (85), Expect = 6e-04
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGI--YKRTIEKF-EKEAQEMGKGSFKYAWVLDKLQA 248
N+ VI HVD GKST T L+ + G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 249 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
E D+ + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 32.3 bits (70), Expect = 0.037
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGIYKR---TIEKFEKEAQEMGKG----SFKYAWVLD 236
N ++ HVD GK+T L+ G I + T+ + E+ +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 237 KLQAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
+ E+ + D Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.086
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 309 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 404
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.1 bits (67), Expect = 0.086
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +3
Query: 87 VIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEA--QEMGKGSFKYAWVLDKLQAERER 260
++GHVD+GK+ +L + +++ E Q++G F + K + ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 261 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
G K + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.5 bits (63), Expect = 0.26
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = +3
Query: 78 NIVVIGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERE 257
+ +V GH+ GKS L+Y Y K K + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVY-----YTHPDTKPPK------RRSLRYT---DTHYLERE 187
Query: 258 RGITID-----IALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 0.46
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 234 DKLQAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 356
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 265 IPRSRSACSLSNTQAYLKEPLPISWASFSNFSMVRL*IPPHS 140
IP+ A S+ N++ + ++ LP + S V+L +P HS
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTHS 214
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 145 AVVSTNVPSKSSRRKPRKWVRVPS 216
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 33 CNP*LTKNGQRKGHINIVVIGHVDSGKSTTTGHLIYECG 149
C LT G++ N V+ VD G +++ +CG
Sbjct: 35 CLASLTPEGRKNNRFNTSVLLQVDDGSGDRPKNILIDCG 73
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 24 HADCNP*LTKNGQRKGHINIVVIGHVDSGKST 119
HA+ N +N +K H ++ GH DS ST
Sbjct: 75 HANSNNEKHENSDKKIHTTVLASGHEDSDYST 106
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 392 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 285
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 81 IVVIGHVDSGKSTTTGHLIYEC 146
IVV+G SGKST + EC
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 84 VVIGHVDSGKSTTTGHLIYECG 149
+V+GH GK+T +YE G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 81 IVVIGHVDSGKSTTTGHLIYECG 149
++V+G SGK+T +YE G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 422 EFTSTSGDNKHGAVSLRRSSDHVLDE 345
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 395 KHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPE 282
K G V + + V+DE ++ ++D+G + AG ++ E
Sbjct: 236 KRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFE 273
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 5.6
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 210 SFK-YAWVLDKLQA-ERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 365
+FK Y L+ L+ E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 3 AFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 266 HHRY-CSLEVRNRQILCHHH 322
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 5.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 90 IGHVDSGKSTTTGHLIYECGGIYKRTIEKFEKEAQEMGKGSFKY 221
I HV G+ L E GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 286 QRAISMVIPRSRSACSLSNTQAYLKEPLPISWASFSN 176
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 9.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 332 WTQRFHQEHDHWN 370
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,949
Number of Sequences: 5004
Number of extensions: 42904
Number of successful extensions: 169
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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