Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J07
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   0.66 
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    24   3.5  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    24   3.5  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        24   3.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    24   3.5  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    23   4.7  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    23   6.2  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    23   6.2  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 79  TIVKFWKIIRVPRMIIKTPENGIKSDS 159
           T+ +F K+  VP+ +++ PE  I  DS
Sbjct: 94  TLFEFLKVENVPKPVLQAPETVIAQDS 120


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 156 IGFYSIFRSFNYHTRNPNYFPKFYYCTLCYME*LQLSKKNPIKI 25
           + F+S F +  +H  +      FY CT    E    + KN +K+
Sbjct: 281 VPFHSAFHTDTFHDSSLLLIYDFYPCTTTLGELYLNNSKNSVKL 324


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
          Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 42 KNPIKIRPAVLAS 4
          KNP++ RPAV++S
Sbjct: 24 KNPVRFRPAVVSS 36


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 98  FQNFTIVPYATWSNFSYLKKIPSKSVQ 18
           F+N+T+VP  T    +Y      +SVQ
Sbjct: 37  FENWTVVPVETIEGINYYPNCLPESVQ 63


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 77  PYATWSNFSYLKKIPSK 27
           P   + NF + KKIPSK
Sbjct: 209 PQTNFENFEFPKKIPSK 225


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 152 DFIPFSGVLIIIRGTLIIF 96
           +F PF  V+I++ GTL  F
Sbjct: 272 EFGPFMSVVILVPGTLAFF 290


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 101 IFQNFTIVPYATWS 60
           +F +F IVPY T+S
Sbjct: 118 VFAHFDIVPYTTYS 131


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 140 FSGVLIIIRGTLIIFQNF 87
           F G++ +I G L IFQ F
Sbjct: 245 FGGIVFMIFGILYIFQGF 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 949,652
Number of Sequences: 5004
Number of extensions: 16010
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)