Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J07
(251 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16621-7|ABA00181.1| 300|Caenorhabditis elegans Hypothetical pr... 28 0.76
Z81116-14|CAB03310.2| 335|Caenorhabditis elegans Hypothetical p... 28 1.0
Z81100-6|CAB03195.2| 335|Caenorhabditis elegans Hypothetical pr... 28 1.0
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family II... 26 3.1
AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical ... 25 7.1
AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical ... 25 7.1
AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical ... 25 7.1
U00049-4|AAC47055.1| 332|Caenorhabditis elegans Serpentine rece... 25 9.4
AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine re... 25 9.4
>L16621-7|ABA00181.1| 300|Caenorhabditis elegans Hypothetical
protein ZK688.10 protein.
Length = 300
Score = 28.3 bits (60), Expect = 0.76
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 161 IESDFIPFSGVLIIIRGTLIIFQNFTIV 78
IE F+P++ +LIII+ T II + TIV
Sbjct: 146 IEKIFVPYTVILIIIKVTNIIILSQTIV 173
>Z81116-14|CAB03310.2| 335|Caenorhabditis elegans Hypothetical
protein K08G2.8 protein.
Length = 335
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -2
Query: 124 LSYAEP*LFSKILLLYPMLHGVTSAI*KKSHQNP 23
LS P FS +L Y LHGV S I QNP
Sbjct: 270 LSIVNPQAFSNLLNFYFSLHGVLSTILMLYLQNP 303
>Z81100-6|CAB03195.2| 335|Caenorhabditis elegans Hypothetical
protein K08G2.8 protein.
Length = 335
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -2
Query: 124 LSYAEP*LFSKILLLYPMLHGVTSAI*KKSHQNP 23
LS P FS +L Y LHGV S I QNP
Sbjct: 270 LSIVNPQAFSNLLNFYFSLHGVLSTILMLYLQNP 303
>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
protein F48C1.1 protein.
Length = 1064
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 122 IIRGTLIIFQNFTIVPYATWSN--FSYLKKIP 33
I+ G I +NF I P WSN F Y +P
Sbjct: 237 IVEGFQFIHKNFGIKPQTMWSNDPFGYSNSVP 268
>Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical
protein K02B12.1 protein.
Length = 380
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 90 FYYCTLCYME*LQLSKKNPIKIRP 19
F T+C E LQLS KN K++P
Sbjct: 228 FSQTTICRFEALQLSFKNMCKLKP 251
>AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family III
homeodomain proteinCEH-6 protein.
Length = 380
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 90 FYYCTLCYME*LQLSKKNPIKIRP 19
F T+C E LQLS KN K++P
Sbjct: 228 FSQTTICRFEALQLSFKNMCKLKP 251
>AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical
protein Y39E4B.10 protein.
Length = 581
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 174 RKTKH*IGFYSIFRSFNYHTRNPNYFPKFY 85
+KT+ + F +IF+ YH R +F FY
Sbjct: 299 KKTQKFLIFLNIFKKNYYHIRKIRFFNFFY 328
>AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical
protein cTel55X.1a protein.
Length = 222
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 125 IIIRGTLIIFQNFTIVPYATWSNFSYL 45
+ R T I+ +PY TWS F +L
Sbjct: 17 VCYRDTTIVTGALLPIPYQTWSRFVWL 43
>AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical
protein cTel55X.1b protein.
Length = 233
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 125 IIIRGTLIIFQNFTIVPYATWSNFSYL 45
+ R T I+ +PY TWS F +L
Sbjct: 17 VCYRDTTIVTGALLPIPYQTWSRFVWL 43
>U00049-4|AAC47055.1| 332|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 3 protein.
Length = 332
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 168 TKH*IGFYSIFRSFNYHTRNPNYFPKFYYCTLCYM 64
T+ + F + SF+ +N F + YYC L Y+
Sbjct: 75 TRSFLYFPQLCVSFSEIVKNSPVFMRIYYCLLSYL 109
>AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine
receptor, class n protein1 protein.
Length = 361
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 158 ESDFIPFSGVLIIIRGTLIIFQNFTIVPYAT 66
E F F G+L++I L +F FTI+ +T
Sbjct: 15 EPAFAVFYGILVLISDLLSLFFIFTIMTKST 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,006,235
Number of Sequences: 27780
Number of extensions: 82081
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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