Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J05
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    26   2.4  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   3.2  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   4.3  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    24   9.8  

>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
          3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 29 RILREILYYVSIHILFLIPY 88
          RI + ILYYVS+ IL+ + Y
Sbjct: 3  RIHKVILYYVSLTILYRVTY 22


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 345 DGNWP*SHRVLLSLLK*IRWPMRMPVYHL 259
           D NW   HR+ LSLL   RW + + V HL
Sbjct: 267 DENWKRDHRLELSLLDNKRW-VNILVSHL 294


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 154 KEIRSLCNLRLLKSLKFVGI*LNY 225
           ++IRSL +LR L++LK + I L+Y
Sbjct: 303 RDIRSLDHLRTLENLKHLRITLSY 326


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 145 KVKKEIRSLCNLRLLKSLKFV 207
           KV KE++SL  L L+ + KFV
Sbjct: 153 KVIKEVKSLLGLSLVDAKKFV 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,025
Number of Sequences: 5004
Number of extensions: 22437
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)