Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J05
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0550 + 24879074-24881290                                         28   3.1  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    28   3.1  
09_06_0005 - 20135073-20135249,20136047-20136824,20137794-201378...    27   4.1  

>11_06_0550 + 24879074-24881290
          Length = 738

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 98 KFTYTELRKEYES--IRNIIFPSIY 30
          KF+YT+LRKEY+S  +   IFP  Y
Sbjct: 3  KFSYTDLRKEYKSCFLYLAIFPPGY 27


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 98  KFTYTELRKEYES--IRNIIFPSIY 30
           KF+YT+LRKEY+S  +   IFP  Y
Sbjct: 818 KFSYTDLRKEYKSCFLYLAIFPPGY 842


>09_06_0005 -
           20135073-20135249,20136047-20136824,20137794-20137854,
           20138253-20138523
          Length = 428

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 146 FNIF*TRKLFLAFFNTKFTYTELRKEYESIRNIIFPSIYV*NVWT 12
           F  F T ++ LAFF  +  + +  +++  +R  + PS Y    WT
Sbjct: 60  FTTFRTIEVALAFFEYQHRHQQHDEQHNPVRGRVKPSQYTIYTWT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,751,584
Number of Sequences: 37544
Number of extensions: 134246
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)