Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J05
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...    43   9e-05
Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical p...    26   8.5  
Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = +3

Query: 240 MKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPLDVASAEAFKGIG 386
           MKIGFIG G++A ALA G I++G    D I AS    D    +  K +G
Sbjct: 1   MKIGFIGAGKMAQALARGLINSGRITADNIIASSPKRDEVFLDQCKALG 49


>Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical
           protein F59F5.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 335 QLPSFRCCQC*SV*GHRCDS 394
           +LPS  CC C S  G  CDS
Sbjct: 104 RLPSVECCHCTSRHGEDCDS 123


>Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical
           protein Y48E1B.7 protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 130 VQKILKVKKEIRSLCNLRLL 189
           V+K+ KVKK+I++L  LRLL
Sbjct: 420 VKKLKKVKKKIKNLAFLRLL 439


>Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical
           protein F32G8.3 protein.
          Length = 129

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 85  RN*EKNMNR-YVI*YFPQYTCKTYGLHLV 2
           +N  KNMNR ++     QY C+T G++L+
Sbjct: 54  KNWNKNMNRNHIAAKQDQYNCQTSGINLI 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,782
Number of Sequences: 27780
Number of extensions: 122703
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)