Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J04
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   6.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.0  

>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 114 IQLKISAEYLLVLQHMLSWRPFHLMRF 34
           + LK ++EY + + H+ S+ PF +  F
Sbjct: 82  VNLKAASEYKITVVHVPSYSPFAVSEF 108


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 464 LTSCFFSI*TINELEKLSSIRVGIDVSLINTLFVFVHFSFP 342
           LT   F++ T+NE+E     RV   +   + +F+F  F  P
Sbjct: 834 LTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRP 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,971
Number of Sequences: 5004
Number of extensions: 28192
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)