Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J01
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 180 8e-47
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 103 2e-23
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 103 2e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 2e-16
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 1.9
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 3.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 3.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 4.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 4.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.9
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 25 5.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.8
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 7.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 180 bits (439), Expect = 8e-47
Identities = 79/107 (73%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Frame = +2
Query: 98 HG-STHGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRP 274
HG + G YHG S+ Q ER+NVY+NEA+GGKYVPRA+LVDLEPGTMD+V+SG FG +FRP
Sbjct: 28 HGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRP 87
Query: 275 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRNEAESCDCIQGFQ 415
DN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR EAE+CD +QGFQ
Sbjct: 88 DNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQ 134
Score = 33.5 bits (73), Expect = 0.017
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 25 EIVHIQPAQCGNQIGA 72
EIVHIQ QCGNQ+GA
Sbjct: 3 EIVHIQAGQCGNQVGA 18
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 103 bits (246), Expect = 2e-23
Identities = 42/97 (43%), Positives = 65/97 (67%)
Frame = +2
Query: 122 HGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG 301
H ++ + +++E GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+
Sbjct: 43 HKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKED 102
Query: 302 AGNNWAKGHYTEGAELVDSVLDVVRNEAESCDCIQGF 412
A NN+A+GHYT G E++DSVL+ +R A++C +QGF
Sbjct: 103 ASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGF 139
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 103 bits (246), Expect = 2e-23
Identities = 42/86 (48%), Positives = 60/86 (69%)
Frame = +2
Query: 155 NVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 334
+ +++E GKYVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT
Sbjct: 50 STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109
Query: 335 EGAELVDSVLDVVRNEAESCDCIQGF 412
G ELVD V D +R A++C +QGF
Sbjct: 110 VGKELVDEVTDKIRRIADNCSGLQGF 135
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 79.8 bits (188), Expect = 2e-16
Identities = 31/92 (33%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Frame = +2
Query: 143 LERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNW 316
++R +V++ ++ +Y+PRAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNW
Sbjct: 45 VDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNW 104
Query: 317 AKGHYTEGAELVDSVLDVVRNEAESCDCIQGF 412
A G Y+ + + ++D++ EA+ D ++GF
Sbjct: 105 ANG-YSHAERIFEDIMDMIDREADGSDSLEGF 135
Score = 27.9 bits (59), Expect = 0.83
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 25 EIVHIQPAQCGNQIGAK 75
EI+ +Q QCGNQIG++
Sbjct: 4 EIITLQAGQCGNQIGSQ 20
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 248 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 349
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 390 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 253
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 306 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 211
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -1
Query: 414 WNPCIQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 271
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 417 SWNPCIQSHDSASLRTTSKTESTSSAP 337
S+NP I SH+SA + T +S++P
Sbjct: 449 SFNPSISSHNSAEWASGETTGHSSNSP 475
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +2
Query: 269 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRNEAESCDC 400
RP +F G++ G + E D ++ + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.9
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 5/130 (3%)
Frame = +3
Query: 90 SDDTDRPTVLTTATQTCSWSASMFITMRXXXXXXXXXXXXXX--XXXXXXXXXXRDPSDR 263
S + PT ++ + S S+S F + PS
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSS 353
Query: 264 SSAPTTSFSDSPAPVTTGLRD---TTRKVLS*SIPS*T*FAMKQSHVIVYKDSNSHTPSE 434
S + TTS S S + ++ + T+ L+ S S + A SH S + S+
Sbjct: 354 SFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSK 413
Query: 435 AVLAPVWAPF 464
+ APV + F
Sbjct: 414 SSSAPVSSAF 423
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -2
Query: 164 NKH*CAPAASLSRRGKHRGSIRVIGDDLPDLAPIWFPHCAGWMCTI 27
N+H P ++ G H + G + + PI C GW+C +
Sbjct: 180 NEHPLIPHSTSQISGVHSNTSSNSGINENAVLPILSSSCPGWICYV 225
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 246 RDPSDRSSAPTTSFSDSPAPVTTGLRDT 329
+DPSD S+PT S +P+ T L+ T
Sbjct: 19 QDPSDAQSSPTFVPSANPSLTTPWLQTT 46
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 399 VYKD-SNSHTPSEAVLAPVWAPFSSL 473
VYK S HT S L +W PFS L
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSEL 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,116
Number of Sequences: 5004
Number of extensions: 31865
Number of successful extensions: 113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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