Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_J01
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   3.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   6.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +2

Query: 350 VDSVLDVVRNEAESCDCIQG 409
           +DS+++++R   ++CD + G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 372 FAMKQSHVIVYKDSNSHTP 428
           FA   SH I+Y  +  H P
Sbjct: 254 FAGLHSHTIIYLSAKGHRP 272


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 34  HIQPAQCGNQIGAKSGRSSPMTRIDPR 114
           H+ PA+   ++     R SP+  I+PR
Sbjct: 18  HVIPAELTAKLLGNCVRVSPVITIEPR 44


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 DSDLQLERINVYYNEASGGKYV 193
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 301 AGLSENEVVGAEDLSE 254
           AGL+E EVV A+ ++E
Sbjct: 62  AGLTEEEVVLAKTIAE 77


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 417 SWNPCIQSHDSASL 376
           S NP +Q HDS  L
Sbjct: 507 SRNPLLQEHDSVML 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,193
Number of Sequences: 438
Number of extensions: 2099
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)