Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I24
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   0.64 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   0.85 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   1.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   2.0  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   2.0  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    25   3.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   4.5  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   4.5  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   4.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   6.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   6.0  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    24   6.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   7.9  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    24   7.9  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +3

Query: 27  ASYDVDQDEVKYHKY----YQWVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 173
           ASY      VK+H+       WV   L+F+AI+  VP     L+ T +GG++++ V
Sbjct: 30  ASYCPQTINVKHHENSFPEQTWVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 189 PIVGEDCKGDRKKLLVDYFHANLNTQNFYAFRFFIREVLNFINVVGQIFFMDFFL 353
           PI  +    D + L    FH   +T       FF+++  NF+ V    F  DF L
Sbjct: 156 PIFSKRKYNDTENLYEQPFHLEFDTCQELLSLFFLKQYHNFMFVFRDYFIRDFEL 210


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 36  DVDQDEVKYHKYYQWVCFV 92
           D+DQD  + H+   WVC++
Sbjct: 308 DLDQDMAELHRRIFWVCYI 326


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 12  VQAGVASYDVDQDEVKYHKYYQWVCFVLF 98
           VQ  +  Y VD  ++ YH +YQ +C   F
Sbjct: 488 VQHNIGLYVVDYGKLSYHLFYQ-ICLTEF 515


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 132 LWKTWEGGRIKMLVLDLNCPIVGEDCKGDRKKLLVDYFHANLNTQ 266
           +W    G  +K LV  +N P+       +RK LLV    +NLN+Q
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLV----SNLNSQ 246


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 132 LWKTWEGGRIKMLVLDLNCPIVGEDCKGDRKKLL 233
           L+  W+    ++ +LDL    + EDCK  +++L+
Sbjct: 9   LYNRWKALERQLEMLDLQEGFIKEDCKSLKRELI 42


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 10   SCRRVSPPTMSTRTKLNTTSTISGF 84
            +CR+    + S RTKL   STI  F
Sbjct: 1574 ACRQALTSSKSVRTKLRAISTIQRF 1598


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 265 KIFMRSVSLYVRY*ILLTSLVRYSSWTS 348
           K+FMRS  +     IL+  L+ YS W S
Sbjct: 127 KLFMRSTVIASHLLILVPPLMFYSKWWS 154


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 335 EYLTNDVNKIQYLTYKETERIKIL 264
           E LTN + + ++L+Y++T   K+L
Sbjct: 486 ERLTNKLGECEHLSYRDTNANKVL 509


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 72  YQWVCFVLFFQAIL 113
           YQW+ FV   QAIL
Sbjct: 308 YQWISFVSLLQAIL 321


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 19  RVSPPTMSTRTKLNTTSTISGFVSYSSFKRS 111
           R SPP+ S   KLN+   + GF ++ S KR+
Sbjct: 200 RYSPPSSS---KLNSKLYVKGFGTHVSLKRT 227


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  FVLFFQAILFYVPRYLWKTWEGGRIK 164
           F +FF    +Y+P+Y  KT+  G +K
Sbjct: 489 FTVFFCVGYYYLPKYGGKTFFKGPVK 514


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 165  MLVLDLNCPIVGEDCKGDRKKLLVDYF 245
            ML+LDLN   V  D  G     LV+YF
Sbjct: 970  MLILDLNGNTVYYDTMGRDLSKLVNYF 996


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 203 FAY-NGAVEIKDQHFDAATLPRFP*VARNVKQDRL 102
           F+Y NG + +KD H +    P++    +++K +R+
Sbjct: 847 FSYENGILTMKDSHSNPPVSPKYSSSQKHLKVERI 881


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,761
Number of Sequences: 5004
Number of extensions: 25942
Number of successful extensions: 100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)