Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I24
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   9.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 124 LATYGKRGRVAASKCWSLISTA 189
           + T   R + + ++CWSL STA
Sbjct: 201 IETDSDRRKGSIARCWSLDSTA 222


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 131 VARNVKQDRLKEEYE 87
           VARN K+D LKE  E
Sbjct: 429 VARNKKKDLLKEILE 443


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 271 FMRSVSLYVRY*ILLTSLVRYSSWTSF 351
           F+RS+  Y+    + + L+   SW SF
Sbjct: 216 FVRSMGYYLIQIYIPSGLIVIISWVSF 242


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 271 FMRSVSLYVRY*ILLTSLVRYSSWTSF 351
           F+RS+  Y+    + + L+   SW SF
Sbjct: 216 FVRSMGYYLIQIYIPSGLIVIISWVSF 242


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 129  SEERKTGSLERRVRNKPTDSTC 64
            SEER+  + E      P D+TC
Sbjct: 1069 SEERRQHTAEGVPEQPPHDTTC 1090


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 271 FMRSVSLYVRY*ILLTSLVRYSSWTSF 351
           F+RS+  Y+    + + L+   SW SF
Sbjct: 155 FVRSMGYYLIQIYIPSGLIVIISWVSF 181


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 76  SGFVSYSSFKRSCFTFLATYGKR 144
           + F  Y   KRS F +L   GK+
Sbjct: 293 NNFPVYQVEKRSPFRYLGARGKK 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,445
Number of Sequences: 438
Number of extensions: 1737
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)