Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I22
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 164 7e-42
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 58 7e-10
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 57 1e-09
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 54 2e-08
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 50 2e-07
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 45 7e-06
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 44 9e-06
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 44 1e-05
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 38 0.001
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.38
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 0.66
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 26 2.7
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 6.1
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 25 6.1
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 164 bits (398), Expect = 7e-42
Identities = 76/118 (64%), Positives = 96/118 (81%)
Frame = +3
Query: 135 RFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKG 314
R YAKD++FG D RA +L GVD LA AV+VT+GPKGRNV+++Q +GSPKITKDGVTVA+
Sbjct: 31 RTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARS 90
Query: 315 VELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGAKPIEIR 488
V LKDKF+N+GA+LVQ+VA+ TNE AGDGTTTATVL RAI E ++ G P+++R
Sbjct: 91 VSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLR 148
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 58.0 bits (134), Expect = 7e-10
Identities = 34/108 (31%), Positives = 56/108 (51%)
Frame = +3
Query: 162 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 341
G D + +A+ V ++GP+G + IL G +T DG T+ +E++ +
Sbjct: 32 GIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQI-- 89
Query: 342 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGAKPIEI 485
AKL+ ++ + ++E GDGTT VLA A+ ++ I KG PI I
Sbjct: 90 --AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRI 135
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 57.2 bits (132), Expect = 1e-09
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +3
Query: 162 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQ-SWGSPKITKDGVTVAKGVELKDKFQ 338
G + R G + D V T+GPKG + IL+ S G +T DG T+ K + L
Sbjct: 18 GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL----D 73
Query: 339 NIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKE 443
N AK++ N++ ++E GDGTT+ V A + ++
Sbjct: 74 NAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQ 108
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 53.6 bits (123), Expect = 2e-08
Identities = 30/106 (28%), Positives = 57/106 (53%)
Frame = +3
Query: 168 DVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIG 347
+VR + +ADA+ ++GPKG + +++ G +T DG T+ K + + +
Sbjct: 19 EVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV----LHPA 74
Query: 348 AKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGAKPIEI 485
AK++ +++ + EAGDGTT+ +LA ++ + + KG P I
Sbjct: 75 AKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVI 120
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 49.6 bits (113), Expect = 2e-07
Identities = 31/108 (28%), Positives = 51/108 (47%)
Frame = +3
Query: 162 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 341
G DVR + +A+ V ++GP G + +L G +T DG T+ + L D
Sbjct: 19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATI---LSLLDVEHP 75
Query: 342 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGAKPIEI 485
G LV+ +A ++E GDGTT+ ++A + + E + P I
Sbjct: 76 AGKVLVE-LAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTI 122
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 44.8 bits (101), Expect = 7e-06
Identities = 26/98 (26%), Positives = 45/98 (45%)
Frame = +3
Query: 186 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 365
+Q +AD + +GP+ +L GS +T DG + + +E+ AK +
Sbjct: 25 IQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHP----AAKSMIE 80
Query: 366 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGAKPI 479
+A +EE GDGTT+ +LA I + + P+
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPV 118
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 44.4 bits (100), Expect = 9e-06
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +3
Query: 210 DAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEE 389
D + T+GP G + ++ G I+ DG T+ K +++ + AK + ++A + E
Sbjct: 38 DTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDI----VHPAAKTLVDIARAQDAE 93
Query: 390 AGDGTTTATVLARAIAKEGFEKISKG 467
GDGTT+ V A + +E + G
Sbjct: 94 VGDGTTSVVVFAGELLREARTFVEDG 119
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = +3
Query: 204 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 383
L D + +GP G +L G+ K+TKDG + +++ QN A + A +
Sbjct: 28 LQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQI----QNPTASCIAKAATAQD 83
Query: 384 EEAGDGTTTATVLARAIAKEGFEKISKGAKP 476
+ GDGTT+ +L + K+ I +G P
Sbjct: 84 DATGDGTTSVCLLVGELLKQAELYIREGLHP 114
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/94 (24%), Positives = 39/94 (41%)
Frame = +3
Query: 204 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 383
L++ ++GP G+N I+ +T D T+ + +E+ + AKLV +
Sbjct: 38 LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEV----IHPAAKLVVDATQQQE 93
Query: 384 EEAGDGTTTATVLARAIAKEGFEKISKGAKPIEI 485
E GD V + + I G P+EI
Sbjct: 94 NELGDAANFVVVFTGELLAKAENMIRMGLTPLEI 127
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 29.1 bits (62), Expect = 0.38
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 243 RNVILEQSWGSPKITKDGVTVAK-GVELKDKFQNIGAKLV 359
R VI ++ S +T G T G+ELKD+F+ +G K++
Sbjct: 542 RKVIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVKVL 581
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 0.66
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -3
Query: 358 TNLAPMFWNLSFSSTPLATVTPSFVILGE-PQDCSRITFLPF-GPIVTATASARMSTPCS 185
T++AP + S+T + + +PS I+G D S + L + PI + T S+ +
Sbjct: 145 TSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNSDNEYT 204
Query: 184 IRALTSAPNLTSF 146
+ +TS+ +L+SF
Sbjct: 205 VDVITSS-SLSSF 216
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 2.7
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -2
Query: 395 SCLLVRIICNVLY*FGTDVLEFVF 324
+CL++ ++C +Y G +EF++
Sbjct: 110 ACLILGVVCTSIYLLGASCMEFIW 133
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 39 NTVKSFHIFTKMLRLPRVVRQSVTLHKTHQLARFYAKDVRF 161
N++K + IF M PR++R ++ +FY K V F
Sbjct: 311 NSLKEW-IFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHF 350
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 339 NIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGAKPIEI 485
NIG +L+ + + +GTT+ V+A + + EG +SK +PI +
Sbjct: 17 NIGGELLNQIKGFNENASTNGTTSFNVVAIS-SMEG-HYVSKDYQPINL 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,889
Number of Sequences: 5004
Number of extensions: 35429
Number of successful extensions: 94
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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