Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I21
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 178 2e-46
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 60 1e-10
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 57 1e-09
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 54 6e-09
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 44 9e-06
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.069
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 29 0.37
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 0.85
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 0.85
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 3.4
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 3.4
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 3.4
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 6.0
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 6.0
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 178 bits (434), Expect = 2e-46
Identities = 85/131 (64%), Positives = 107/131 (81%)
Frame = +2
Query: 8 ASKLIGADADFFSEMVVDAAQAIKITDSKGNSAYPIKAVNILKAHGRSARESILVKGYAL 187
+SK+IG D+DFFS M VDA ++K ++SKG + YP+KAVNILKAHG+S+RES+LVKGYAL
Sbjct: 162 SSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYAL 221
Query: 188 NCTVASQAMPKKILNAKIACLDFSLQKTKMKLGVQVLITDPEKLDAIRARELDITKERLQ 367
NCT+ASQAM ++ NAKIA LD LQKTKM LGV V I DP++L+ IR RE+ IT ER++
Sbjct: 222 NCTIASQAMKTRVQNAKIAVLDMDLQKTKMALGVHVTIDDPDQLEKIREREVMITLERVK 281
Query: 368 KILSTGVNVIL 400
KIL+ G NVIL
Sbjct: 282 KILNAGANVIL 292
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 60.1 bits (139), Expect = 1e-10
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Frame = +2
Query: 11 SKLIGADADFFSEMVVDAAQAIKITDSKGNSAYPIKAVNILKAHGRSARESILVKGYALN 190
SKLI +++ FF++MVVDA + D N + I K G + +S+LVKG A
Sbjct: 169 SKLIRSNSTFFTKMVVDAVLTLDQEDLNENM------IGIKKVPGGAMEDSLLVKGVAFK 222
Query: 191 CTVAS---QAMPKKILNAKIACLDFSLQKTKMKLGVQVLITDPEKLDAIRARELDITKER 361
T + + PK N KI CLD L+ K +V + ++ I E I +
Sbjct: 223 KTFSYAGFEQQPKFFKNPKILCLDVELELKAEKDNAEVRVDKVQEYQNIVDAEWRIIFSK 282
Query: 362 LQKILSTGVNVIL 400
L+ I++TG V+L
Sbjct: 283 LEAIVATGAKVVL 295
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 56.8 bits (131), Expect = 1e-09
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +2
Query: 11 SKLIGADADFFSEMVVDAAQAIKITDSKGNSAYPIKAVNILKAHGRSARESILVKGYALN 190
SK++ ++ + + VDA +K+ D + + +K + I+K G ++ L+ G AL
Sbjct: 160 SKIVSQYSNLLAPIAVDAV--LKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGLALT 217
Query: 191 CT-VASQAMPKKILNAKIACLDFSLQKTKMKLGVQVLITDPEKLDAIRARELDITKERLQ 367
T V S P +I A IA + F L K + QV++ D ++D I E +
Sbjct: 218 QTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYLLNMCK 277
Query: 368 KILSTGVNVIL 400
KI G NVIL
Sbjct: 278 KIKKAGANVIL 288
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 54.4 bits (125), Expect = 6e-09
Identities = 36/131 (27%), Positives = 65/131 (49%)
Frame = +2
Query: 11 SKLIGADADFFSEMVVDAAQAIKITDSKGNSAYPIKAVNILKAHGRSARESILVKGYALN 190
SK++ D F+ + VDA ++ K IK + G S ++ LVKG ++
Sbjct: 177 SKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKV---GGSVDDTKLVKGVVVD 233
Query: 191 CTVASQAMPKKILNAKIACLDFSLQKTKMKLGVQVLITDPEKLDAIRARELDITKERLQK 370
++ MP +I NAKIA L + K K ++ IT + +A++A E + +E ++
Sbjct: 234 KDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH 293
Query: 371 ILSTGVNVILC 403
+ G N+++C
Sbjct: 294 VKDAGANLVIC 304
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 9e-06
Identities = 31/123 (25%), Positives = 57/123 (46%)
Frame = +2
Query: 8 ASKLIGADADFFSEMVVDAAQAIKITDSKGNSAYPIKAVNILKAHGRSARESILVKGYAL 187
++K+ + + VVDA I+ D + V I+K RSA ++ L++G L
Sbjct: 155 STKISSKVVESLAPAVVDAILTIRRPDEP----IDLHMVEIMKMQNRSASDTQLIRGLLL 210
Query: 188 NCTVASQAMPKKILNAKIACLDFSLQKTKMKLGVQVLITDPEKLDAIRARELDITKERLQ 367
+ MPK++ NA I L+ SL+ K ++ + E+ + + E +L+
Sbjct: 211 DHGARHPDMPKQVKNAYILILNVSLEYEKSEINSGFFYSTSEQRERLVESERKFVDNKLR 270
Query: 368 KIL 376
KI+
Sbjct: 271 KIV 273
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 31.1 bits (67), Expect = 0.069
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 323 HPTSPDQLSVPERRVSSLSFAARSPNRRSSH*VSS*AWPVRRQY-SSGRN 177
HP +PD++ ER+V SL+ RSP S+ +S W R +Y S G+N
Sbjct: 407 HPQTPDRIVKVERKVHSLNMTLRSPKAGSAGKENS--W--RSKYLSEGKN 452
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 28.7 bits (61), Expect = 0.37
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 161 SILVKGYALNCTVASQAMPKKILNAKIACLDFSLQ 265
+I++ G AL + +K+ ++I+CLDFS Q
Sbjct: 482 AIVINGTALAIFKKDTEVARKVFESEISCLDFSAQ 516
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 27.5 bits (58), Expect = 0.85
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 359 VPS*YQVPVHVSHPTSPDQLSVPERRVSSLSFAARS 252
VPS Y+ P+ V+ T+ LS+PE ++ S +++S
Sbjct: 565 VPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKS 600
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 0.85
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 406 RAEDHVYSCGENL-LQAFLRDIKFPCTYRIQLLRIS 302
R +D +S E L L FL+ IK CTY +L +S
Sbjct: 438 RGDDGAHSINEKLDLDNFLKGIKLFCTYVHELASVS 473
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 1.5
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 227 LNAKIACLDFSLQKTKMKLG-VQVLITDPEKLDAIRARELDITK--ERLQKILSTGVNVI 397
L K L +Q TK ++ Q+L+T PEK D + + + T+ E+++ ++ V+++
Sbjct: 367 LGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHML 426
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 68 QAIKITDSKGNSAYPIKAVNILKAHGRSARES 163
Q I+++ +GN YP AV G S R+S
Sbjct: 954 QEIELSSRRGNRPYPSSAVESPSYSGTSERKS 985
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 3.4
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = -1
Query: 332 HVSHPTSPDQLSVPERRVSSLSFAARSPNRRSSH*VSS*AWPVRRQYSSGRNP*PVYSPE 153
H+S P SP ++ P+R +S SF SP + + S RR + + SP
Sbjct: 491 HLSRPPSPGIVTPPQR--TSPSFFV-SPTESTRQSLDS-----RRSFEHSTSSSSGISPS 542
Query: 152 HSCRALLRCSQ 120
HS +L SQ
Sbjct: 543 HSSASLAHLSQ 553
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 138 AFKMFTAL--IGYAELPLESVIFIACAASTT 52
+F F L I YAE P+E V + C AS T
Sbjct: 369 SFTQFNLLDEIIYAEAPVEEVFRVLCLASIT 399
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 24.6 bits (51), Expect = 6.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -1
Query: 371 SSAGVPS*YQVPVHVSHPTSPDQLSVPERRVSSLSFAARSPNRRS 237
SS+GVP+ PV+V PT P + S +R L A SP S
Sbjct: 1028 SSSGVPAPNLTPVNVP-PTPPPRKSSASQRSGDL--LASSPEESS 1069
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 6.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 148 PAVRF*DVHSFDRICGVTLGVCDLYSLRCIYYHLREEISISSN 20
P +R D SF +CG +G+ + L+ YHL + S +S+
Sbjct: 300 PELRLID-SSFKELCGDAIGLANYSRLQPSDYHLLPDPSSNSH 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,622
Number of Sequences: 5004
Number of extensions: 31556
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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