Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I21
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 132 KMFTALIGYAELPLESVIFIACAASTTISEKKSASAPISF 13
           K   + +    LPL     +  A+ST   +KK+A +   F
Sbjct: 554 KRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRF 593


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 174 LTSILSRALLPCAFKMFTALIGYAELPLESVIFIACAA 61
           +TS+  + L   AF   T     A L    V+  AC++
Sbjct: 22  MTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSS 59



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 262 AKDKDETRRSGTDN*SGEVGCDTCTGT*YHEGTPAEDSL 378
           A D      +  +N +G++ C T  G   H   P E  L
Sbjct: 254 ANDNGNGNGASNNNNNGDMFCHTGLGHYGHHPDPGEVDL 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,283
Number of Sequences: 438
Number of extensions: 2047
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)