Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I19
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    78   4e-16
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    75   3e-15
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    28   0.39 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   2.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   2.8  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   3.7  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   3.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   3.7  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    25   3.7  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   4.9  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   4.9  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   6.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   6.4  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    24   6.4  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    24   8.5  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 78.2 bits (184), Expect = 4e-16
 Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
 Frame = +3

Query: 186 MKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKHEMAEEYR 359
           MK V  T  EL+ EERNLLSVAYKNV+GARR+SWR++SSIEQK E  G+  + E+ +EYR
Sbjct: 29  MKSVASTDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYR 88

Query: 360 VK 365
            K
Sbjct: 89  QK 90



 Score = 29.9 bits (64), Expect = 0.13
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 107 SVDKEELVQRAKLAEQAERYDDM 175
           +  +E+ V  AKLAEQAERY+ M
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGM 25


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 75.4 bits (177), Expect = 3e-15
 Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
 Frame = +3

Query: 186 MKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKHEMAEEYR 359
           MK+V  +  +LS EERNLLSVAYKN++GARR+SWR+ISSIEQK E  G+ R+  + +EYR
Sbjct: 28  MKKVACSNDKLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYR 87

Query: 360 VK 365
            K
Sbjct: 88  KK 89



 Score = 31.9 bits (69), Expect = 0.032
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 104 MSVDKEELVQRAKLAEQAERYDDM 175
           MS  +E  V  AKLAEQAERY++M
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEM 24


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 198 TETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 299
           +ET  E+SN+E N LL + YK V     S+W   S
Sbjct: 34  SETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 191 LHRGTPCHHIVQPA 150
           L+R  PCHHI  PA
Sbjct: 511 LYRELPCHHIFHPA 524


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 240  LSVAYKNVVGARRSSWRVISSIEQKTEGSERKHEMAEEY 356
            L  A  N+   + S  R IS +E K +  E+K + A+EY
Sbjct: 966  LQNASLNMQSLKDSDNRTISDLESKNKELEKKLKEADEY 1004


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 232 ETFFPLLIKMWSAPDGHHGESFPLLNRKP 318
           E F P L++  +A D  +GE+  LL R+P
Sbjct: 104 EVFLPQLLRYPNASDPLNGEAAALLLREP 132


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 243 SVAYKNVVGARRSSWRVISSIEQKTEGSERKHEMAEEY 356
           S +Y  + G   S W+ I  ++ K+ G +R    +E Y
Sbjct: 61  SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERY 98


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +3

Query: 72  ISEINIFHRPRCPSIRRN*YNAPSWLSRLNDMMTWRAAMKEVTETGVELSN 224
           ISE  + +R RC ++    Y   + L  ++D +  +  + E + + +++SN
Sbjct: 735 ISEELVDYRSRCEALEYGNYELETKLIEMHDRVEMQTNVIEASASALDVSN 785


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 150 SRLNDMMTWRAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSE 329
           S+L  +  + A   E  +  VEL   E   LS   KN+  AR +    I  ++Q     E
Sbjct: 89  SQLKAINAFEAKASEGAKKNVELVKAELQNLSATLKNIEQARPTEEITIEDMKQAVPEIE 148

Query: 330 R 332
           +
Sbjct: 149 K 149


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 95  SSTMSVDKEELVQRAKLAEQAERYDDMACRDEGSDGNRRRAQQRRKKPS 241
           SS  S  +    +R+  + +A  YD    RD+     R+R++ R ++ S
Sbjct: 181 SSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERS 229


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 116 KEELVQRAKLAEQAERYDDMACRDEGSDGNRRRAQQRRKK 235
           KEE+ Q+    EQ+    +   +++  +  R+R  ++R+K
Sbjct: 322 KEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRK 361


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 185 DEGSDGNRRRAQQRRKKPSFRCL*KCGRRPTVIMAS 292
           DEG     ++ Q ++KKPS R   + GR+P+ + +S
Sbjct: 108 DEGKAIAPKKKQTKQKKPSVRG--RRGRKPSSLSSS 141


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 159 NDMMTWRAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKH 338
           N ++TW+   + + +   +L  E  +LLS  YK +     S+   I   E+     + K+
Sbjct: 472 NQILTWKNKYEALAKLYTQLRQEHLDLLS-KYKQIQLKASSAQEAIDKKEKMEREMKNKN 530

Query: 339 -EMAE 350
            E+A+
Sbjct: 531 LELAD 535


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 143 LAEQAERYDDMACRDEGSDGNRRRAQQRRKKP 238
           L   A+R D+ A R    DG ++    R+K+P
Sbjct: 6   LGGHAQRRDESAYRLGEEDGRQKGESSRKKRP 37


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 300 SIEQKTEGSERKHEMAEE 353
           S E K E S+RKH+ AEE
Sbjct: 23  SNETKDETSKRKHDPAEE 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,062
Number of Sequences: 5004
Number of extensions: 30711
Number of successful extensions: 100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)