Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I17
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 70 1e-13
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 70 1e-13
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 1.4
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 2.4
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 24 5.6
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 24 5.6
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 24 5.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 7.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 24 7.5
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 69.7 bits (163), Expect = 1e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLR 170
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV +
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFK 51
Score = 37.1 bits (82), Expect = 7e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 172 VAGG*RQAGLPL*NRESLTNSRVRLLMSKGHSCYRPRRE 288
+ GG + G P+ L + RVRLL+ GH CYRPRR+
Sbjct: 52 ITGGNDKQGFPMFQGVLLPH-RVRLLLRAGHPCYRPRRD 89
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 69.7 bits (163), Expect = 1e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLR 170
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV +
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFK 51
Score = 37.1 bits (82), Expect = 7e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 172 VAGG*RQAGLPL*NRESLTNSRVRLLMSKGHSCYRPRRE 288
+ GG + G P+ L + RVRLL+ GH CYRPRR+
Sbjct: 52 ITGGNDKQGFPMFQGVLLPH-RVRLLLRAGHPCYRPRRD 89
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 1.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 189 SLPAGNTGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 19
S P + G ++ S+R L+ L+ +Q Y HP TSD M+ ++
Sbjct: 381 STPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQAPPPHPLRNYTSDAESISMRSKST 437
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 2.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 167 PVLPAGNDKQGFPYETGSP*LTAVYVS*CQKATLATDHVVN 289
PV AG D P++T P LT +S CQ+AT + +N
Sbjct: 293 PVFIAG-DFNTEPFDTNFPALTTRPLSICQRATDIIERSMN 332
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 297 LSPFTTWSVARVAF*HQETYTAVSQGLPVS 208
+ P T WS H+ Y A+ GLP +
Sbjct: 167 VKPLTLWSTLLYIVQHEGGYPALYNGLPAT 196
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 24.2 bits (50), Expect = 5.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 78 EHKLRIFYEKRMGAEVDADLLGDEWKGYVLRCCRRVTTSRASLMKQGVLD*QPCT 242
EHK + FYEK +G + W+G + V T R L LD P T
Sbjct: 53 EHKGKPFYEKLVGFMASGPVCAMIWEGK-----QAVKTGRLMLGASNPLDSAPGT 102
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 60 LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 152
+FE V EH L Y+K + ++D L+ W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 7.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 289 VHDVVCSKSGLLTSRDVHGC 230
+ D++C+ + TS D+H C
Sbjct: 850 IFDILCNIKSIATSLDIHIC 869
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 291 PFTTWSVARVAF*HQETYT 235
P+T WSVA+ F YT
Sbjct: 344 PYTRWSVAQAKFDQDPRYT 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,710
Number of Sequences: 5004
Number of extensions: 24850
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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