Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_I17
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 71 2e-13
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 69 7e-13
12_02_1197 + 26915933-26916298 30 0.55
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 3.9
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 5.1
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 27 5.1
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 6.7
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 26 6.7
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 26 8.9
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 26 8.9
04_01_0539 - 6986728-6986996,6987807-6988284,6988580-6988594,699... 26 8.9
04_01_0067 - 673381-673387,675388-678131 26 8.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/69 (49%), Positives = 44/69 (63%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRCCRRVTTSR 197
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV + +
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGG-CDKQ 59
Query: 198 ASLMKQGVL 224
MKQGVL
Sbjct: 60 GFPMKQGVL 68
Score = 32.3 bits (70), Expect = 0.10
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 GNDKQGFPYETGSP*LTAVYVS*CQKATLATDHVV-NGERKRKSVRGCIVDANL 340
G DKQGFP + G V + + + +GER+RKSVRGCIV +L
Sbjct: 55 GCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDL 108
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 172 VAGG*RQAGLPL*NRESLTNSRVRLLMSKGHSCYR 276
+ GG + G P+ + LT+ RVRLL+ +G C+R
Sbjct: 52 IMGGCDKQGFPM-KQGVLTSGRVRLLLHRGTPCFR 85
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 69.3 bits (162), Expect = 7e-13
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRCCRRVTTSR 197
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV + +
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGG-CDKQ 59
Query: 198 ASLMKQGVL 224
MKQGVL
Sbjct: 60 GFPMKQGVL 68
Score = 33.5 bits (73), Expect = 0.044
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 182 GNDKQGFPYETGSP*LTAVYVS*C-QKATLATDHVV--NGERKRKSVRGCIVDANL 340
G DKQGFP + G LTA V + T +GER+RKSVRGCIV +L
Sbjct: 55 GCDKQGFPMKQGV--LTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDL 108
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 172 VAGG*RQAGLPL*NRESLTNSRVRLLMSKGHSCYR 276
+ GG + G P+ + LT RVRLL+ +G C+R
Sbjct: 52 IMGGCDKQGFPM-KQGVLTAGRVRLLLHRGTPCFR 85
>12_02_1197 + 26915933-26916298
Length = 121
Score = 29.9 bits (64), Expect = 0.55
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 167 PVLPAGNDKQGFPYETGSP*LTAVYVS*C 253
P L G+D GFPYET + L V+++ C
Sbjct: 49 PGLDGGDDDDGFPYETITMWLVVVFLAMC 77
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 215 LFHKGSPACRYPPATPENITFPFVA*KICINFSAHT 108
+FH SP +P PE PF ++ + + HT
Sbjct: 106 VFHLASPLTLHPTQDPEATNSPFTIAQLQLQYCLHT 141
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 54 QKLF-EVVDEHKLRIFYEKR 110
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 217 ESLTNSRVRLLMSKGHSCYRP 279
E++ + R R+ M++GHS YRP
Sbjct: 435 ETMYDPRERIEMAQGHSLYRP 455
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 72 VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 167
++ + +RIF + + E D++ EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 54 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 149
+KL+ EV +LRI YEKR+ + D+ GDE
Sbjct: 492 KKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 249 QETYTAVSQGLPVS*GKPCLSLPAGNTGEHNLSIRRLED 133
++T + + +P G+P +SLP G L +RLED
Sbjct: 740 EDTPPPLDELVPGFSGQPIVSLPGGGRLSAGLQYQRLED 778
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 149 MERLCSPVLPAGNDKQGFPYETGSP 223
ME+L S L G+ GFPY++ SP
Sbjct: 846 MEQLHSLDLGNGSANHGFPYKSSSP 870
>04_01_0539 -
6986728-6986996,6987807-6988284,6988580-6988594,
6990029-6990043,6990279-6990875
Length = 457
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 198 PCLSLPAGNTGEHNLSIRRLEDL 130
PC +P GE SIR+ EDL
Sbjct: 201 PCNKMPCNKRGEILTSIRQFEDL 223
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 189 SLPA--GNTGEHNLSIRRLEDLHQLQRPYAFH 100
S+PA G + ++L++ +EDL L + YAFH
Sbjct: 337 SVPAMLGASCTYHLNVLDIEDLWSLLKKYAFH 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,392,574
Number of Sequences: 37544
Number of extensions: 187542
Number of successful extensions: 476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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