Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I17
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    81   3e-16
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    26   8.1  
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    26   8.1  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    26   8.1  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 40/69 (57%), Positives = 48/69 (69%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRCCRRVTTSR 197
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R        +
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVR-IGGGNDKQ 59

Query: 198 ASLMKQGVL 224
              MKQG+L
Sbjct: 60  GFPMKQGIL 68



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 28/53 (52%), Positives = 32/53 (60%)
 Frame = +2

Query: 182 GNDKQGFPYETGSP*LTAVYVS*CQKATLATDHVVNGERKRKSVRGCIVDANL 340
           GNDKQGFP + G      V +   +K         NGERKRKSVRGCIVDAN+
Sbjct: 55  GNDKQGFPMKQGILTNGRVRLL-LKKGQSCYRERKNGERKRKSVRGCIVDANM 106


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 159 NLSIRRLEDLHQLQRPYAFHRRY 91
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 159 NLSIRRLEDLHQLQRPYAFHRRY 91
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 117 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 19
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 117 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 19
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical
           protein T24H10.7d protein.
          Length = 155

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 42  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 94  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 127


>Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical
           protein T24H10.7c protein.
          Length = 101

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 42  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 40  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 73


>Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical
           protein T24H10.7b protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 42  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 238 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 271


>Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical
           protein T24H10.7a protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 42  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 258 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 291


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
           protein F21G4.6 protein.
          Length = 1885

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 212 FHKGSPAC--RYPPATPENITFPFV 144
           +H    AC  +YPP+ P  + FP V
Sbjct: 477 YHSSETACEDQYPPSLPLRVDFPHV 501


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 87  LRIFYEKRMGAEVDADLLGD 146
           +R+ YEK  G  ++AD+ GD
Sbjct: 122 IRVTYEKEYGKALEADIAGD 141


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 87  LRIFYEKRMGAEVDADLLGD 146
           +R+ YEK  G  ++AD+ GD
Sbjct: 122 IRVTYEKEYGKALEADIAGD 141


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 123 VDADLLGDEWKGYVLRCCRRVTTSRASLMK 212
           VD+  LGD W G +LR  R +    A   K
Sbjct: 291 VDSKRLGDPWLGRILRANRTLLNQLADSFK 320


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 51  CQKLFEVVDEHKLRIFYEK 107
           CQKL E+ DEHK +   EK
Sbjct: 315 CQKLTELFDEHKEKYGVEK 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,825
Number of Sequences: 27780
Number of extensions: 151597
Number of successful extensions: 375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)