Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I17
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.33 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   1.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   7.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.33
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 191 CRYPPATPENITFPFV 144
           C  PP+ P+N+T  FV
Sbjct: 314 CTQPPSAPQNLTVNFV 329


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 253 SKGHSCYRPRRER*EETQVCS 315
           SKG S  R  RER +ET++ S
Sbjct: 285 SKGRSRDRTERERSKETKIIS 305


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 253 SKGHSCYRPRRER*EETQVCS 315
           SKG S  R  RER +ET++ S
Sbjct: 296 SKGRSRDRTERERSKETKIIS 316


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 256  KGHSCYRPRRER*EETQVCS 315
            + HS + PRR   EE   C+
Sbjct: 1677 RSHSTWDPRRHMYEELNHCA 1696


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 108 RMGAEVDADLLGDEWKGYV 164
           R+G  + +D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 209 HKGSPACRYPPATPENITFPFVA 141
           H GS A   P A   +  +P+V+
Sbjct: 71  HSGSSASTSPAARTTSSMYPYVS 93


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VERFIPGNGM 52
           +E ++PGNG+
Sbjct: 416 IEEYLPGNGV 425


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 261 PLLLQTTS*TVRG 299
           PL+++TTS  VRG
Sbjct: 37  PLVVETTSGLVRG 49


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 261 PLLLQTTS*TVRG 299
           PL+++TTS  VRG
Sbjct: 37  PLVVETTSGLVRG 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,249
Number of Sequences: 438
Number of extensions: 1870
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)