Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I15
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   1.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   5.5  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    24   7.3  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   9.7  

>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 322 ANKVVAIVLAYSKRSHPKPLRPSLLAQGGIGNGSAI 215
           AN+V +  L  +K S PKPL  S + +   GNG +I
Sbjct: 325 ANQVSSTSL--TKSSSPKPLPSSAIVKFDFGNGKSI 358


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  CEVKISLKSVSY*YLYDSA 92
           C VK+SL  ++  +LYDS+
Sbjct: 70  CNVKVSLDEINAIFLYDSS 88


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 78  DINNSHFLKKSSLHKITPNNDNNASC 1
           ++ N  +L    +HKI   ND +A C
Sbjct: 531 ELPNFDYLVSDQVHKIVEINDEHADC 556


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 195 FVITKQVMALPLPIPP 242
           F+  KQ+  LP P+PP
Sbjct: 170 FITAKQLSRLPTPLPP 185


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 242 GWNRQWQCHNLLRNYEQTIE 183
           GW   +Q + LL+ YE   E
Sbjct: 424 GWEDAYQTYQLLKEYESAFE 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,674
Number of Sequences: 5004
Number of extensions: 30104
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)