Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I15
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640...    31   0.44 
06_01_1021 + 7990313-7990535,7990634-7990708,7991885-7991952           30   0.76 
06_03_0830 + 25159758-25162460                                         29   1.3  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    27   5.4  
12_02_0680 + 21903520-21904093,21904474-21905162                       27   7.1  
11_06_0698 + 26385989-26389090                                         27   7.1  
08_02_0998 - 23411422-23411649,23411897-23412625                       27   7.1  
03_05_1005 + 29626662-29627354,29628478-29628551,29628821-296289...    27   7.1  
06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808     26   9.4  

>07_01_1096 -
           10063016-10063117,10063530-10063580,10063924-10064033,
           10064367-10064454,10064543-10064603,10065198-10065295,
           10065394-10065512,10066593-10066702,10066801-10066859
          Length = 265

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 236 NRQWQCHNLLRNYEQTIEILVVFSYV*LLLWQLFCLHSFKKNCNKLTFSRI 84
           N+ W+   L RNYE+ IE++       L  W    +H  K+   K+T  RI
Sbjct: 73  NKLWERVKLPRNYEKAIEVINRH----LEFWPKLLVHKIKQRLTKMTQYRI 119


>06_01_1021 + 7990313-7990535,7990634-7990708,7991885-7991952
          Length = 121

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 364 DMECSSISRSVLTGANKVVAIVLAYSKRSHPKPLRPSLLAQGGIGNGSAIT 212
           ++  ++  R  L  + KV A VLA S    PKP  P L   GG  +G  IT
Sbjct: 33  ELAAAATERDNLATSVKVQARVLALSPSGFPKPPGPGLPCPGGGYHGIYIT 83


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  PNHIDINNSHFLKKSSLHKITPNNDNNA 7
           PNH   N++  + K SL  I PN+D NA
Sbjct: 202 PNHSQTNDNCDIVKQSLVMIPPNSDGNA 229


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 225 PLPIPPCAKRDGLSGLGCERFEYASTMATTLLAPVKTERE-ILEHSMSEDDP 377
           P P PP A R  + G G   + + S + +     V  E + ++  +MS  DP
Sbjct: 149 PAPTPPRAARHDVLGSGTANYGHGSIVRSRSGGVVVAEEDAVVRRAMSSADP 200


>12_02_0680 + 21903520-21904093,21904474-21905162
          Length = 420

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 99  DLQPNHIDINNSHFLKKSSLHKITPNND 16
           +L P H+D      +++S ++ +TP+ D
Sbjct: 316 ELMPGHVDTAGGPVIRQSCMYSMTPDED 343


>11_06_0698 + 26385989-26389090
          Length = 1033

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -2

Query: 373 SSSDMECSSISRSVLTGANKVVAIVLAYSKRSHPKPLRPSLLAQGGIG 230
           SSS +E + + + V+    +VV +VLA+ K++     + +++  GG+G
Sbjct: 162 SSSLVEPNLVGKEVIRACREVVDLVLAHKKKN---VYKLAIVGTGGVG 206


>08_02_0998 - 23411422-23411649,23411897-23412625
          Length = 318

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 304 IVLAYSKRSHPKPLRPSLLAQGGI 233
           +VLA   R+H  P  P  LA GG+
Sbjct: 108 VVLARGGRAHDAPQAPEALAHGGV 131


>03_05_1005 +
           29626662-29627354,29628478-29628551,29628821-29628963,
           29629051-29629097,29629176-29629284,29629364-29629425,
           29629791-29629905,29630375-29630535
          Length = 467

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +3

Query: 222 LPLPIPPC-AKRDGLSG 269
           LPLP+PPC A R+G  G
Sbjct: 86  LPLPLPPCRAHREGRGG 102


>06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808
          Length = 260

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 266 TKTIPFSTGWNRQWQCHNLLRNYEQTIEI 180
           T  IP    W + WQC   LR    + E+
Sbjct: 201 TGWIPMGRNWGQNWQCDADLRGQPLSFEV 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,649,295
Number of Sequences: 37544
Number of extensions: 180699
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)