Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I15
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF016424-6|AAB65333.1|  366|Caenorhabditis elegans Transforming ...    27   6.3  

>AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical
           protein F36H9.5 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -1

Query: 269 ATKTIPFSTGWNRQWQCHNLLRNYEQTIEILVVFSYV*LLLWQLFCLHSFKKNC 108
           A +   F  GW ++  CH+ +  +   +E  +  +Y+   L  L  LH  +  C
Sbjct: 258 APQYFQFHIGWTKESLCHSYIPRHFAIMEYSLFLAYITFHLLSLLDLHHLQFIC 311


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 78  DINNSHFLKKSSLHKITPNNDNNAS 4
           ++NN+H +KK +L  +   +D N S
Sbjct: 570 EVNNNHIVKKGNLKSMRARSDTNLS 594


>AF016424-6|AAB65333.1|  366|Caenorhabditis elegans Transforming
           growth factor betafamily protein 2 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 66  SHFLKKSSLHKITPNNDNNASC 1
           SH + +S+LH++ PN+   A C
Sbjct: 310 SHAIVQSTLHRVRPNSTTPAKC 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,628,847
Number of Sequences: 27780
Number of extensions: 165560
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)