Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I14
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    69   3e-13
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    59   2e-10
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    29   0.20 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   2.4  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    25   5.6  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.6  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.4  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    24   9.8  

>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 31/68 (45%), Positives = 47/68 (69%)
 Frame = +3

Query: 135 NGAVLFLLVYYIITLSDLECDYLNSQECCEKLNYWLLPKYIAHSFVTLLLLLHGQVILML 314
           NGA + L ++ +I  SDLE DY+N  + C KLN  ++P+ I+H+ VTLLLLL  + +L L
Sbjct: 20  NGANMLLQIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFL 79

Query: 315 LNLPMFIW 338
            NLP+ ++
Sbjct: 80  ANLPLLVF 87


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 29/76 (38%), Positives = 46/76 (60%)
 Frame = +3

Query: 111 VFALSLIDNGAVLFLLVYYIITLSDLECDYLNSQECCEKLNYWLLPKYIAHSFVTLLLLL 290
           ++  SL+   A + L +Y+ +  SDL+ D++N  +   KLN+++LP+    +F  LLLLL
Sbjct: 6   IYFTSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLL 65

Query: 291 HGQVILMLLNLPMFIW 338
            G  I  LLN+PM  W
Sbjct: 66  SGAWITFLLNVPMLAW 81


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 96  FGETLVFALSLIDNGAVLFLLVYYIITLSDLECDYLNSQECCEKLNYWL--LPKYIAHSF 269
           FG +L FA S   +GA    ++  I+  SD E     + EC     Y+L  +P Y   S 
Sbjct: 301 FGNSLSFAASNGVDGASSSQVLENILVASDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360

Query: 270 VTLLLL 287
             L+L+
Sbjct: 361 AKLVLM 366


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 222  EKLNYWLLPKYIAHSFVTLLLLLHGQVILML 314
            EKL +W   + +AHS + L  L  G V L L
Sbjct: 1277 EKLGFWDKIRLVAHSQIRLRWLEDGDVFLSL 1307


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 143 GTIIDQRQCKNQGFA-KYHNYNLLKTTI 63
           GT++ +R+ K QG+A +Y   N+++ TI
Sbjct: 154 GTLLKKRRKKGQGYARRYFTLNMVEGTI 181


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 138 GAVLFLLVYYIITLSDLECDYLNSQECC 221
           G +L  LVYY +T S      L  +E C
Sbjct: 13  GFILLFLVYYYLTHSHCPRKQLEGEETC 40


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 174 TLSDLEC---DYLNSQECCEKLNYWL-LPKYIAHSFVTLLLLLHGQVIL 308
           TL+D+ C    +L+S    + L ++     +  HS V +++L HG+ IL
Sbjct: 348 TLNDVGCRNVQFLSSLISQQDLTFFYPFSSFTVHSNVRIIILSHGRSIL 396


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 269 CYTIIIASWSSNIDVIEFTHVYMAYF 346
           C  I   SW S++  ++F    MAYF
Sbjct: 568 CIAIDSISWISSLQGVKFRSKLMAYF 593


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 80  NCSYDIWRNLGFCIVVDR 133
           N  + IW N+ FCI V +
Sbjct: 619 NLEFSIWGNVKFCIEVSK 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,442
Number of Sequences: 5004
Number of extensions: 32373
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)