Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I14
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0261 + 1926458-1926523,1926959-1927144                           50   5e-07
01_06_0353 - 28647452-28647477,28647568-28649134                       29   1.4  
05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531     29   1.8  
12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994     27   5.5  
01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970           27   7.2  

>06_01_0261 + 1926458-1926523,1926959-1927144
          Length = 83

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 20/63 (31%), Positives = 42/63 (66%)
 Frame = +3

Query: 141 AVLFLLVYYIITLSDLECDYLNSQECCEKLNYWLLPKYIAHSFVTLLLLLHGQVILMLLN 320
           A++ L++Y ++ L+DLE DY+N  +   ++N  ++P+++  + +++L LL G   + LL+
Sbjct: 14  ALIVLVIYQLMCLADLEFDYINPFDSSSRINKVVIPEFVLQAALSVLFLLSGHWAMFLLS 73

Query: 321 LPM 329
            PM
Sbjct: 74  APM 76


>01_06_0353 - 28647452-28647477,28647568-28649134
          Length = 530

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 243 LPKYIAHSFVTLLLLLHGQVILMLLNLPMFIWLTFEYFTIPQGNLG 380
           LP Y+A+S  +L L   GQ    +  L  F W   ++  +P GNLG
Sbjct: 297 LPIYLANSLNSLRL--EGQKTAAIEILQQFDWQVPDWVIVPGGNLG 340


>05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531
          Length = 588

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 243 LPKYIAHSFVTLLLLLHGQVILMLLNLPMFIWLTFEYFTIPQGNLG 380
           LP Y+A+S  +L L   GQ    +  L  F W   ++  +P GNLG
Sbjct: 293 LPIYLANSLNSLRL--EGQKTAAIEILQQFDWEVPDWVIVPGGNLG 336


>12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994
          Length = 196

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 123 SLIDNGAVLFLLVYYIITLSDLECDYLNSQECCEKLNYWL 242
           SL     ++  ++  I+T++D  CD    Q+C  KL+Y+L
Sbjct: 3   SLCGTMIIILAMLPAILTMADPYCDCDCPQQCEVKLHYYL 42


>01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970
          Length = 580

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 192 CDYLNSQECCEKLNYW 239
           C Y+ + ECCE+L Y+
Sbjct: 33  CPYILANECCERLAYY 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,329,625
Number of Sequences: 37544
Number of extensions: 160678
Number of successful extensions: 245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)