Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I14
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...    69   1e-12
Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z47070-4|CAA87342.1|  363|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical pr...    27   4.9  

>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = +3

Query: 114 FALSLIDNGAVLFLLVYYIITLSDLECDYLNSQECCEKLNYWLLPKYIAHSFVTLLLLLH 293
           + L+LI  G  +F  +Y +I + +L  DY N  E C  LN  +LP+YI H   T+L +  
Sbjct: 10  YLLALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIHGTFTVLFIFS 69

Query: 294 GQVILMLLNLPMFIWLTFEYFTIP-QGNLGVYDP 392
            Q+I +L NLP+  +  + Y   P     G+YDP
Sbjct: 70  WQLISILANLPLAFYHIYTYAKRPVMSGPGIYDP 103


>Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical
           protein F48F7.6 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 192 CDYLNSQECCEKLNYWLLPKYIAHSFVTLLLLLHGQVILMLLNL 323
           C+YL    CC+K     LP+  A S   ++ L    + LM+  L
Sbjct: 26  CNYLKDSYCCKKTKNMTLPQKKAESAFLMICLQRNTIELMVTAL 69


>Z47070-4|CAA87342.1|  363|Caenorhabditis elegans Hypothetical
           protein T09B9.5 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +3

Query: 252 YIAHSFVTLLLLLH--GQVILML---LNLPMFIWLTFEYFTIPQ 368
           Y+  S +TLL+LLH  G + +ML   L      W++F  F++ +
Sbjct: 183 YLTFSLLTLLILLHATGLIFIMLASVLQRDKKSWISFTIFSLKE 226


>U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical
           protein R12B2.8 protein.
          Length = 80

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 213 ECCEKLNYWLLPKYIA 260
           ECC +L YW+ P  IA
Sbjct: 48  ECCYRLRYWVYPASIA 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,436
Number of Sequences: 27780
Number of extensions: 168570
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)