Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I14
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.55 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +3

Query: 96  FGETLVFALSLIDNGAVLFLLVYYIITLSDLECDYLNSQECCEKLNYWLLPKYIAHSFVT 275
           FG + +      D+   L  L  Y+    D     ++S +    +   LLPK +     T
Sbjct: 27  FGFSYLLNCKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWT 86

Query: 276 LLLLLHGQVILM 311
            ++ LH  + LM
Sbjct: 87  SVMELHSWMTLM 98


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 267 FVTLLLLLHGQVI 305
           FV + +LLHGQVI
Sbjct: 12  FVIINVLLHGQVI 24


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 141 AVLFLLVYYIIT 176
           AVLFL +YY +T
Sbjct: 12  AVLFLALYYYLT 23


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 137 WCRIVFISILYNYVV 181
           W R+VFI +L  +++
Sbjct: 336 WVRVVFIQVLPRFLL 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,763
Number of Sequences: 438
Number of extensions: 2372
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)