Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I10
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   1.0  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   5.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   7.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   7.4  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.4  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 14  RHEDWNLAVTRKS*FSQSVQCV*CSFP 94
           R  DWN  +   S F +   C  CSFP
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFP 369


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 19  RGLEPSCDEEILIFSKCAMRVVQFSLSEEDL 111
           + LEP  D +  + S  AM +++   SEE++
Sbjct: 18  QALEPISDADASVLSDYAMALLRHDSSEEEV 48


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 7    RNSARGLEPSCDEEILIFSKCAMRVVQFSLSEEDLN 114
            +N   GLE + D    +FSK   R ++     ++ N
Sbjct: 1008 KNDTIGLESAVDSNEALFSKVLRRPIEKETGADESN 1043


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 121 YDCSDLLPIRKTALHALHTLRKLRFP 44
           YD  D +PI++T    L  L    FP
Sbjct: 575 YDLRDAVPIQETLAKMLEILETPSFP 600


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 62  EKIKISSSQLGSNP 21
           E+IKISSS++ S+P
Sbjct: 543 EEIKISSSKMNSSP 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,865
Number of Sequences: 5004
Number of extensions: 5863
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)