Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_I10
         (125 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z54270-1|CAA91025.1|  126|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  EPSCDEEILIFSKCAMRVVQFSLSEEDLNSH 120
           E   D EI+    C+  +V  SLSEED +SH
Sbjct: 435 EGKVDSEIIWGVACSRSLVYKSLSEEDESSH 465


>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  EPSCDEEILIFSKCAMRVVQFSLSEEDLNSH 120
           E   D EI+    C+  +V  SLSEED +SH
Sbjct: 435 EGKVDSEIIWGVACSRSLVYKSLSEEDESSH 465


>Z54270-1|CAA91025.1|  126|Caenorhabditis elegans Hypothetical
           protein F11C1.1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 34  SCDEEILIFSKCAMRVVQFSLSEED 108
           +C E+++ F +CAMR   F  ++ +
Sbjct: 95  ACGEQLMAFMECAMRTQCFKTNDSN 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,312
Number of Sequences: 27780
Number of extensions: 33697
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 12,740,198
effective HSP length: 22
effective length of database: 12,129,038
effective search space used: 230451722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)